PANCHANGE_data_preprocessing
Katie Thompson, Topher Huebel, Molly Davies, Kirstin Purves
Sys.Date()
This is the preprocessing script to prepare the data to run analyses for the project “Anxiety, depression and trauma symptom change during the COVID-19 pandemic: retrospective versus objective assessment” - Young et al (2020)
Script written by K Purves, K Thompson, C Huebel and M Davies. Email: kirstin.purves@kcl.ac.uk, katie.thompson@kcl.ac.uk, christopher.1.huebel@kcl.ac.uk, molly.davies@kcl.ac.uk
#Set up
Clear global environment
Retrieve the current date to use it for file endings to not overwrite files when one exports files
Specify cohort
#Packages Install packages (if they are not available in your version of R)
Load packages
Registered S3 method overwritten by 'pryr':
method from
print.bytes RcppLoading required package: ggplot2
Attaching package: 'ggplot2'The following objects are masked from 'package:psych':
%+%, alpha── Attaching packages ──────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.0 ──✓ tibble 3.0.3 ✓ dplyr 1.0.1
✓ tidyr 1.1.1 ✓ stringr 1.4.0
✓ readr 1.3.1 ✓ forcats 0.5.0
✓ purrr 0.3.4 ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
x ggplot2::%+%() masks psych::%+%()
x ggplot2::alpha() masks psych::alpha()
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()
x tibble::view() masks summarytools::view()Colour palettes
Define colours for plotting this are the standard coping colours
Choose in this chunk which palette to use 04.07.2020 - Default to 2 colour COPING palette
#Add_numeric function Function used to convert character variables into numeric variables.
Data import and merging
Note: GLAD only receives current measures and RAMP questionnaire Note: All COPING surveys are separate surveys
Source data file paths
Demographics
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
Cohort information
Information on INTERVAL, COMPARE, and STRIDES http://www.donorhealth-btru.nihr.ac.uk/studies/
RAMP
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "demographics.how_old_are_you"
[6] "demographics.which_gender_do_you_identify_with"
[7] "demographics.are_you_pregnant"
[8] "demographics.what_is_your_current_maritalrelationship_status"
[9] "demographics.living_situation_change_pandemic"
[10] "demographics.living_alone"
[11] "demographics.living_with_partner_or_spouse"
[12] "demographics.living_with_housemates"
[13] "demographics.age_children_living"
[14] "demographics.living_children_under_the_age_of_18"
[15] "demographics.living_with_other_members_of_my_family"
[16] "demographics.spouse_partner_members_living"
[17] "demographics.staying_live"
[18] "demographics.staying_live.1"
[19] "demographics.prefer_not_to_say"
[20] "demographics.describe_relationships_live_living"
[21] "demographics.cats"
[22] "demographics.dogs"
[23] "demographics.fish"
[24] "demographics.bird"
[25] "demographics.reptile"
[26] "demographics.small_rodent"
[27] "demographics.other_please_specify_species"
[28] "demographics.other_please_specify_species_text.txt"
[29] "demographics.none"
[30] "demographics.02_years"
[31] "demographics.35_years"
[32] "demographics.610_years"
[33] "demographics.1115_years"
[34] "demographics.1618_years"
[35] "demographics.email_address_send_follow"
[36] "demographics.email_address_send_follow.1"
[37] "demographics.count_bathrooms_bedrooms_hallways"
[38] "demographics.vulnerable_group_member"
[39] "demographics.solid_organ_transplant_recipient"
[40] "demographics.lung_cancer_radical_radiotherapy"
[41] "demographics.bone_marrow_leukaemia_lymphoma"
[42] "demographics.immunotherapy_cancer_continuing_antibody"
[43] "demographics.parp_inhibitors_affect_immune"
[44] "demographics.stem_cell_transplants_bone"
[45] "demographics.cystic_fibrosis_severe_asthma"
[46] "demographics.inborn_errors_metabolism_infections"
[47] "demographics.taking_medicine_that_weakens_your_immune_system"
[48] "demographics.condition_infections_makes"
[49] "demographics.congenital_pregnant_acquired_significant"
[50] "demographics.pregnant"
[51] "demographics.over_70_years_old"
[52] "demographics.prefer_not_to_say.1"
[53] "demographics.unsure"
[54] "demographics.do_you_identify_as_transgender"
[55] "demographics.adult_children_pandemic_returned"
[56] "demographics.adult_children_pandemic_returned.txt"
[57] "demographics.where_in_the_uk_do_you_live.txt"
[58] "demographics.what_is_your_sexual_orientation"
[59] "demographics.what_is_your_sexual_orientation.txt"
[60] "demographics.what_is_your_ethnic_origin"
[61] "demographics.what_is_your_ethnic_origin.txt"
[62] "demographics.living_alone.1"
[63] "demographics.living_with_partner_or_spouse.1"
[64] "demographics.living_with_housemates.1"
[65] "demographics.age_children_living.1"
[66] "demographics.living_children_under_the_age_of_18.1"
[67] "demographics.living_with_other_members_of_my_family.1"
[68] "demographics.spouse_partner_members_living.1"
[69] "demographics.staying_live.2"
[70] "demographics.staying_live.3"
[71] "demographics.prefer_not_to_say.2"
[72] "demographics.household_living_place_answer"
[73] "demographics.do_you_have_any_children"
[74] "demographics.adult_children_living_home"
[75] "demographics.under_50_years"
[76] "demographics.5060_years"
[77] "demographics.6170_years"
[78] "demographics.7180_years"
[79] "demographics.81_years" Select variables
[1] 34Demographics variable creation
Gender categories synchronised
RAMP has the correct Gender categories so does not need editing.
Ethnicity recoding
Clean Age variable
Age outlier
Categorise age into groups
In RAMP, age is indicated categorically: 16-18, 19-25, 26-35, 36-45, 46-55, 56-65, 66-70, 71-75, 76-80, 81-85, 86-90, 91-100, 100+ Age categories in GLAD, EDGI and NBR have been created to reflect this
Highest education (prepandemic, GLAD & EDGI)
Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE
Check highest education coding
Employment
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "employment.what_is_your_highest_level_of_education"
[6] "employment.fulltime_employed"
[7] "employment.parttime_employed"
[8] "employment.unemployed"
[9] "employment.zerohours_contract"
[10] "employment.stayathome_parent_or_carer"
[11] "employment.selfemployed"
[12] "employment.contract_or_freelance_work"
[13] "employment.small_business_owner"
[14] "employment.receiving_state_income"
[15] "employment.retired"
[16] "employment.student_gcse_or_a_level"
[17] "employment.student_university"
[18] "employment.my_employment_status_has_not_changed"
[19] "employment.became_unemployed"
[20] "employment.reduction_in_hours"
[21] "employment.reduction_in_salary"
[22] "employment.benefits_increased"
[23] "employment.benefits_decreased"
[24] "employment.change_in_duties_or_responsibilities"
[25] "employment.became_employed"
[26] "employment.increased_hours"
[27] "employment.increased_salary"
[28] "employment.furloughed_or_paid_leave_government_funded"
[29] "employment.furloughed_or_paid_leave_company_funded"
[30] "employment.paid_leave_furloughed"
[31] "employment.other"
[32] "employment.other_text.txt"
[33] "employment.no_impact"
[34] "employment.cancelled_exams"
[35] "employment.change_in_format_of_exams"
[36] "employment.automatic_pass"
[37] "employment.change_in_deadlines"
[38] "employment.change_in_lesson_delivery"
[39] "employment.past_performance_grade_decided"
[40] "employment.cancelled_classes"
[41] "employment.cannot_complete_degree"
[42] "employment.impact_on_studies_still_unknown"
[43] "employment.other.1"
[44] "employment.other_text.txt.1"
[45] "employment.complete_home_work"
[46] "employment.are_you_currently_working_from_home"
[47] "employment.role_type"
[48] "employment.does_your_job_include_caring_for_others"
[49] "employment.is_your_job_public_facing_"
[50] "employment.government_work_key_workers"
[51] "employment.government_work_key_workers.txt"
[52] "employment.work_attend_work_encouraged"
[53] "employment.scale_line_losing_click"
[54] "employment.increased_due_job_pandemic"
[55] "employment.role_type.1"
[56] "employment.role_type.txt" Select variables
[1] 34Highest education (baseline, GLAD, EDGI, NBR)
Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE
Check highest education coding
Highest education (baseline, RAMP)
Frequencies
employment.raw.id$highest_education
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
---------------- ------ --------- -------------- --------- --------------
GCSE/CSE 1249 14.80 14.80 13.08 13.08
A-levels 1708 20.24 35.04 17.89 30.97
University 5483 64.96 100.00 57.43 88.40
<NA> 1107 11.60 100.00
Total 9547 100.00 100.00 100.00 100.00Key worker status
Frequencies
employment.raw.id$key_worker
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
------------------- ------ --------- -------------- --------- --------------
No key worker 5903 67.97 67.97 61.83 61.83
Key worker 2782 32.03 100.00 29.14 90.97
<NA> 862 9.03 100.00
Total 9547 100.00 100.00 100.00 100.00Columns to exclude from add_numeric
mhd
GLAD
EDGI
NBR
RAMP
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "NA.30.depression"
[6] "NA.30.pregnancy_depression"
[7] "NA.30.premenstrual_dysphoric_disorder_pmdd"
[8] "NA.30.mania_hypomania_bipolar_or_manicdepression"
[9] "NA.30.anxiety_nerves_or_generalised_anxiety_disorder"
[10] "NA.30.social_anxiety_or_social_phobia"
[11] "NA.30.specific_phobia_e.g._phobia_of_flying"
[12] "NA.30.agoraphobia"
[13] "NA.30.panic_disorder"
[14] "NA.30.panic_attacks"
[15] "NA.30.posttraumatic_stress_disorder_ptsd"
[16] "NA.30.obsessivecompulsive_disorder_ocd"
[17] "NA.30.body_dysmorphic_disorder_bdd"
[18] "NA.30.skin_picking_obsessive_compulsive"
[19] "NA.30.obsessive_compulsive_related_disorder.txt"
[20] "NA.30.none_of_these"
[21] "NA.30.dont_know"
[22] "NA.30.prefer_not_to_answer"
[23] "NA.30.anorexia_nervosa"
[24] "NA.30.atypical_anorexia_nervosa"
[25] "NA.30.bulimia_nervosa"
[26] "NA.30.psychological_overeating_or_bingeeating_disorder"
[27] "NA.30.schizophrenia"
[28] "NA.30.schizoaffective_disorder"
[29] "NA.30.psychosis_type_psychotic_illness"
[30] "NA.30.personality_disorder"
[31] "NA.30.autism_aspergers_or_autistic_spectrum_disorder"
[32] "NA.30.attention_deficit_hyperactivity_disorder"
[33] "NA.30.other_please_tell_us_more"
[34] "NA.30.other_please_tell_us_more_text.txt"
[35] "NA.30.none_of_these.1"
[36] "NA.30.dont_know.1"
[37] "NA.30.prefer_not_to_answer.1"
[38] "NA.30.personality_disorder_diagnosed" [1] 34Grouping mental health disorders
#Disorder groupings - from COPING/RAMP analysis minutes 1. Depressive disorder group: major depression, antenatal/postnatal depression, premenstrual depression. The logic for this has been double checked for males - KT/MD. 2. Anxiety group: generalised anxiety, social anxiety, specific phobia, agoraphobia, panic_disorder, panic_attacks. 3. Agoraphobia and panic_disorder group: panic_disorder, agoraphobia, panic_attacks. 4. Eating disorders group: anorexianervosa, atypical anorexia nervosa, bulimia nervosa, overeating or bingeeating. 5. Obsessive complusive disorders: obsessive compulaive disorder, obsessive compulsive related disorders. 6. Psychotic disorders: schizophrenia, schizoaffective disorder, general psychosis or psychotic illness. 7. Personality disorders: cluster A, cluster B, cluster C 8. Control group: no diagnosed disorders.
Disorders of interest MDD and other depressive disorders Anxiety, nerves or generalised anxiety disorder Social anxiety Specific phobia Agoraphobia/panic disorder/panic attacks OCD (& OCD-related disorders e.g., skin picking?) PTSD Bipolar Eating disorders (Anorexia, BE-type EDs) Personality disorder: Clusters A, B, and C No-diagnosis group
Analysis plan of Disorders: KY and KP analysis plan 1. Basic: any anxiety or unipolar depressive disorder vs. those with no prior diagnosis 2. Specific: breakdown by type of prior anxiety (& related) disorder diagnosis 3. Breakdown by COVID or not (using COVIDENCE/Zoe algorithm)
Depressive disorders
Warning: Problem with `mutate()` input `depressive_disorders`.
x NAs introduced by coercion
ℹ Input `depressive_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$depressive_disorders
Type: Factor
Freq % Valid % Total
---------------------------- ------ --------- ---------
No depressive disorder 4323 49.56 45.28
Depressive disorder 4400 50.44 46.09
<NA> 824 8.63
Total 9547 100.00 100.00Anxiety disorders
Warning: Problem with `mutate()` input `anxiety_disorders`.
x NAs introduced by coercion
ℹ Input `anxiety_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$anxiety_disorders
Type: Factor
Freq % Valid % Total
------------------------- ------ --------- ---------
No anxiety disorder 4906 56.24 51.39
Anxiety disorder 3817 43.76 39.98
<NA> 824 8.63
Total 9547 100.00 100.00Agoraphobia and panic disorder group
Warning: Problem with `mutate()` input `agoraphobia_panic_disorder`.
x NAs introduced by coercion
ℹ Input `agoraphobia_panic_disorder` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$agoraphobia_panic_disorder
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------------------------------- ------ --------- -------------- --------- --------------
No agoraphobia/panic disorder 6928 79.42 79.42 72.57 72.57
Agoraphobia/panic disorder 1795 20.58 100.00 18.80 91.37
<NA> 824 8.63 100.00
Total 9547 100.00 100.00 100.00 100.00Depression and anxiety comorbidity
Warning: Problem with `mutate()` input `depression_and_anxiety`.
x NAs introduced by coercion
ℹ Input `depression_and_anxiety` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$depression_and_anxiety
Type: Factor
Freq % Valid % Total
--------------------------------------- ------ --------- ---------
No depressive or anxiety disorder 3412 39.11 35.74
Depressive and anxiety disorder 2906 33.31 30.44
Only depressive disorder 1494 17.13 15.65
Only anxiety disorder 911 10.44 9.54
<NA> 824 8.63
Total 9547 100.00 100.00Eating disorders
There is routing questionnaire if participants have been diagnosed with an eating disorder and afterwards they get asked the specific disorders. Therefore, mhd.suspected_eating_disorder_diagnosed_numeric needs to be recoded as 0 otherwise they would be NAs.
Warning: Problem with `mutate()` input `eating_disorders`.
x NAs introduced by coercion
ℹ Input `eating_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$eating_disorders
Type: Factor
Freq % Valid % Total
------------------------ ------ --------- ---------
No eating disorder 7616 93.24 79.77
Eating disorder 552 6.76 5.78
<NA> 1379 14.44
Total 9547 100.00 100.00For EDGI does not include other eating disorders, such as purging disorder, rumination disorder, ARFID, or Pica
Eating disorders with binge eating vs eating disorders without Caveat: Anorexia nervosa can have binge eating as well. Therefore, this would need an additional variable from the ED100K
Warning: Problem with `mutate()` input `restricting_vs_binge_eating_eating_disorders`.
x NAs introduced by coercion
ℹ Input `restricting_vs_binge_eating_eating_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$restricting_vs_binge_eating_eating_disorders
Type: Factor
Freq % Valid % Total
--------------------------------------- ------ --------- ---------
No eating disorder 7616 93.24 79.77
Anorexia nervosa 328 4.02 3.44
Eating disorder with binge eating 224 2.74 2.35
<NA> 1379 14.44
Total 9547 100.00 100.00Obsessive compulsive disorders
Warning: Problem with `mutate()` input `obsessive_compulsive_disorders`.
x NAs introduced by coercion
ℹ Input `obsessive_compulsive_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$obsessive_compulsive_disorders
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
-------------------------------------- ------ --------- -------------- --------- --------------
No obsessive compulsive disorder 8040 92.17 92.17 84.21 84.21
Obsessive compulsive disorder 683 7.83 100.00 7.15 91.37
<NA> 824 8.63 100.00
Total 9547 100.00 100.00 100.00 100.00Psychotic disorders
“mhd.schizophrenia_numeric”
“mhd.schizoaffective_disorder_numeric”
“mhd.type_psychosis_psychotic_illness_numeric”
Warning: Problem with `mutate()` input `psychotic_disorders`.
x NAs introduced by coercion
ℹ Input `psychotic_disorders` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$psychotic_disorders
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
--------------------------- ------ --------- -------------- --------- --------------
No psychotic disorder 7986 97.77 97.77 83.65 83.65
Psychotic disorder 182 2.23 100.00 1.91 85.56
<NA> 1379 14.44 100.00
Total 9547 100.00 100.00 100.00 100.00Overlap between self-report schizophrenia and bipolar disorder +++CH: Check overlap between schizophrenia group and bipolar disorder ++KT: Only 63 with comorbid self-report bipolar disorder and schizophrenia. More likely to have shared symptoms, less likely to have confirmed diagnoses of both. Could be too severe to be in GLAD?
Warning: Problem with `mutate()` input `bipolar_and_schizophrenia`.
x NAs introduced by coercion
ℹ Input `bipolar_and_schizophrenia` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$bipolar_and_schizophrenia
Type: Factor
Freq % Valid % Total
-------------------------------------- ------ --------- ---------
No psychotic or bipolar disorder 7815 95.80 81.86
Psychotic and bipolar disorder 88 1.08 0.92
Only psychotic disorder 94 1.15 0.98
Only bipolar disorder 161 1.97 1.69
<NA> 1389 14.55
Total 9547 100.00 100.00Autism spectrum disorder
Frequencies
mhd.raw.id$autism_spectrum_disorder
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
--------------------------------- ------ --------- -------------- --------- --------------
No autism spectrum disorder 7950 97.33 97.33 83.27 83.27
Autism spectrum disorder 218 2.67 100.00 2.28 85.56
<NA> 1379 14.44 100.00
Total 9547 100.00 100.00 100.00 100.00Personality disorders
++KT: For all cluster coding chunks - have added other clusters as == 0, so that they are not coerced into NAs. Cluster A 1. Paranoid 28 ( 1.0%) 2. Schizoid 15 ( 0.5%) 3. Schizotypal 14 ( 0.5%)
Warning: Problem with `mutate()` input `personality_cluster_a`.
x NAs introduced by coercion
ℹ Input `personality_cluster_a` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_a
Type: Factor
Freq % Valid % Total
--------------------------------------- ------ --------- ---------
No personality disorder cluster A 8132 99.85 85.18
Personality disorder cluster A 12 0.15 0.13
<NA> 1403 14.70
Total 9547 100.00 100.00Cluster B 4. Antisocial 24 ( 0.8%) 5. Borderline 2553 (89.4%) 6. Histrionic 7 ( 0.2%) 7. Narcissistic 8 ( 0.3%)
Warning: Problem with `mutate()` input `personality_cluster_b`.
x NAs introduced by coercion
ℹ Input `personality_cluster_b` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_b
Type: Factor
Freq % Valid % Total
--------------------------------------- ------ --------- ---------
No personality disorder cluster B 7880 96.76 82.54
Personality disorder cluster B 264 3.24 2.77
<NA> 1403 14.70
Total 9547 100.00 100.00Cluster C 8. Avoidant/anxious 133 ( 4.7%) 9. Dependent 29 ( 1.0%) 10. Obsessive-compulsive
Warning: Problem with `mutate()` input `personality_cluster_c`.
x NAs introduced by coercion
ℹ Input `personality_cluster_c` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$personality_cluster_c
Type: Factor
Freq % Valid % Total
--------------------------------------- ------ --------- ---------
No personality disorder cluster C 8125 99.77 85.11
Personality disorder cluster C 19 0.23 0.20
<NA> 1403 14.70
Total 9547 100.00 100.00Controls
These individuals have no self report diagnosis of any kind that we measure.
Warning: Problem with `mutate()` input `control`.
x NAs introduced by coercion
ℹ Input `control` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$control
Type: Factor
Freq % Valid % Total
---------------- ------ --------- ---------
No control 5747 66.21 60.20
Control 2933 33.79 30.72
<NA> 867 9.08
Total 9547 100.00 100.00Total disorder count
Frequencies
mhd.raw.id$disorders_total_count
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 3132 38.39 32.81
1 1872 22.95 19.61
2 1849 22.66 19.37
3 713 8.74 7.47
4 334 4.09 3.50
5 160 1.96 1.68
6 61 0.75 0.64
7 26 0.32 0.27
8 9 0.11 0.09
9 2 0.02 0.02
<NA> 1389 14.55
Total 9547 100.00 100.00Comorbidity count
Frequencies
mhd.raw.id$comorbidity_total_count_numeric
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 1872 37.25 19.61
1 1849 36.79 19.37
2 713 14.19 7.47
3 334 6.65 3.50
4 160 3.18 1.68
5 61 1.21 0.64
6 26 0.52 0.27
7 9 0.18 0.09
8 2 0.04 0.02
<NA> 4521 47.36
Total 9547 100.00 100.00Warning: Problem with `mutate()` input `comorbidity_total_count_factor`.
x NAs introduced by coercion
ℹ Input `comorbidity_total_count_factor` is `recode_factor(...)`.Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercionFrequencies
mhd.raw.id$comorbidity_total_count_factor
Type: Factor
Freq % Valid % Total
-------------------------- ------ --------- ---------
No comorbidity 1872 37.25 19.61
1 comorbid disoder 1849 36.79 19.37
2 comorbid disoders 713 14.19 7.47
3+ comorbid disoders 592 11.78 6.20
<NA> 4521 47.36
Total 9547 100.00 100.00Inspection
Create new dataframe with the derived categories
Prepandemic
GAD (prepan)
Calculate sum score for GAD-7 Max should be 21.
*Note that scores with missingness will be changed to NA later in the script
missingness (NAs per person)
prepandemic
PCL (prepan)
Calculate sum score for PCL-6
*Note that scores with missingness will be changed to NA later in the script
Missigness
prepandemic
PHQ (prepan)
Calculate sum score for PHQ-9
*Note that scores with missingness will be changed to NA later in the script
PHQ missingness (NAs per person)
prepandemic
all times
+++CH: THINK ABOUT THIS!!!
8 items
OCIR (prepan)
Calculate sum score for OCI-R
*Note that scores with missingness will be changed to NA later in the script
prepandemic
COPING GAD-7
GLAD
EDGI
NBR
RAMP
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "gad.feeling_nervous_anxious_or_on_edge"
[6] "gad.control_worrying_stop"
[7] "gad.worrying_too_much_about_different_things"
[8] "gad.trouble_relaxing"
[9] "gad.sit_hard_restless"
[10] "gad.becoming_easily_annoyed_or_irritable"
[11] "gad.awful_feeling_afraid_happen"
[12] "gad.feelings_pandemic_felt"
[13] "gad.feeling_nervous_anxious_or_on_edge.1"
[14] "gad.control_worrying_stop.1"
[15] "gad.worrying_too_much_about_different_things.1"
[16] "gad.trouble_relaxing.1"
[17] "gad.sit_hard_restless.1"
[18] "gad.becoming_easily_annoyed_or_irritable.1"
[19] "gad.awful_feeling_afraid_happen.1"
[20] "gad.issues_made_carrying_daily" [1] 34Sum scores
Calculate sum score for GAD-7 retrospective
Warning in scoreItems(keys = gad.items_key_retro, items =
coping.gad.raw.id[gad.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Warning: `funs()` is deprecated as of dplyr 0.8.0.
Please use a list of either functions or lambdas:
# Simple named list:
list(mean = mean, median = median)
# Auto named with `tibble::lst()`:
tibble::lst(mean, median)
# Using lambdas
list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro_raw
N: 9580
gad.sum_score_retro_raw
--------------- -------------------------
Mean 3.64
Std.Dev 4.44
Min 0.00
Median 2.00
Max 21.00
N.Valid 9580.00
Pct.Valid 100.00Calculate sum score for GAD-7 baseline
Warning in scoreItems(keys = gad.items_key_base, items =
coping.gad.raw.id[gad.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base_raw
N: 9580
gad.sum_score_base_raw
--------------- ------------------------
Mean 7.48
Std.Dev 6.26
Min 0.00
Median 6.00
Max 21.00
N.Valid 9580.00
Pct.Valid 100.00Missingness
baseline
Frequencies
coping.gad.raw.id$na_per_person_gad_base
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 8742 91.25 91.25
1 7 0.07 0.07
3 2 0.02 0.02
4 2 0.02 0.02
6 1 0.01 0.01
7 826 8.62 8.62
<NA> 0 0.00
Total 9580 100.00 100.00Frequencies
coping.gad.raw.id$na_per_person_gad_retro
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 6535 68.22 68.22
1 4 0.04 0.04
3 1 0.01 0.01
6 1 0.01 0.01
7 3039 31.72 31.72
<NA> 0 0.00
Total 9580 100.00 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base_raw
N: 9580
gad.sum_score_base_raw
--------------- ------------------------
Mean 7.48
Std.Dev 6.26
Min 0.00
Median 6.00
Max 21.00
N.Valid 9580.00
Pct.Valid 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_base
N: 9580
gad.sum_score_base
--------------- --------------------
Mean 8.18
Std.Dev 6.09
Min 0.00
Median 7.00
Max 21.00
N.Valid 8742.00
Pct.Valid 91.25Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro_raw
N: 9580
gad.sum_score_retro_raw
--------------- -------------------------
Mean 3.64
Std.Dev 4.44
Min 0.00
Median 2.00
Max 21.00
N.Valid 9580.00
Pct.Valid 100.00Descriptive Statistics
coping.gad.raw.id$gad.sum_score_retro
N: 9580
gad.sum_score_retro
--------------- ---------------------
Mean 5.34
Std.Dev 4.46
Min 0.00
Median 4.00
Max 21.00
N.Valid 6535.00
Pct.Valid 68.22Inspection
COPING: PCL-6
GLAD
Note: Retro for the PCL does not mean retrospective
EDGI
Note: Retro for the PCL does not mean retrospective
NBR
Note: Retro for the PCL does not mean retrospective
RAMP
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "pcl.stressful_experience_repeated_images"
[6] "pcl.stressful_experience_reminded_upset"
[7] "pcl.stressful_experience_avoiding_activities"
[8] "pcl.feeling_distant_cut_people"
[9] "pcl.feeling_irritable_or_having_angry_outbursts"
[10] "pcl.difficulty_concentrating"
[11] "pcl.stressful_experience_repeated_images.1"
[12] "pcl.stressful_experience_reminded_upset.1"
[13] "pcl.stressful_experience_avoiding_activities.1"
[14] "pcl.feeling_distant_cut_people.1"
[15] "pcl.feeling_irritable_or_having_angry_outbursts.1"
[16] "pcl.difficulty_concentrating.1" Note: Retro for the PCL does not mean retrospective
[1] 34Recode RAMP PCL retro scores
[1] "Sample"
[2] "ID"
[3] "pcl.stressful_experience_repeated_images_base"
[4] "pcl.stressful_experience_upset_reminded_base"
[5] "pcl.stressful_situation_avoiding_activities_base"
[6] "pcl.cut_people_feeling_distant_base"
[7] "pcl.feeling_irritable_or_having_angry_outbursts_base"
[8] "pcl.difficulty_concentrating_base"
[9] "pcl.stressful_experience_repeated_images_base_numeric"
[10] "pcl.stressful_experience_upset_reminded_base_numeric"
[11] "pcl.stressful_situation_avoiding_activities_base_numeric"
[12] "pcl.cut_people_feeling_distant_base_numeric"
[13] "pcl.feeling_irritable_or_having_angry_outbursts_base_numeric"
[14] "pcl.difficulty_concentrating_base_numeric"
[15] "pcl.stressful_experience_repeated_images_retro_numeric"
[16] "pcl.stressful_experience_upset_reminded_retro_numeric"
[17] "pcl.stressful_situation_avoiding_activities_retro_numeric"
[18] "pcl.cut_people_feeling_distant_retro_numeric"
[19] "pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric"
[20] "pcl.difficulty_concentrating_retro_numeric"
[21] "pcl.stressful_experience_repeated_images_retro"
[22] "pcl.stressful_experience_upset_reminded_retro"
[23] "pcl.stressful_situation_avoiding_activities_retro"
[24] "pcl.cut_people_feeling_distant_retro"
[25] "pcl.feeling_irritable_or_having_angry_outbursts_retro"
[26] "pcl.difficulty_concentrating_retro" Sum scores
Calculate sum score for PCL-6 retro
Warning in scoreItems(keys = pcl.items_key_retro, items =
coping.pcl.raw.id[pcl.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro_raw
N: 9580
pcl.sum_score_retro_raw
--------------- -------------------------
Mean 1.65
Std.Dev 1.58
Min 0.00
Median 1.00
Max 6.00
N.Valid 9580.00
Pct.Valid 100.00Calculate sum score for PCL-6 base The sum scores here will not be accurate if we are using complete cases. Only use sum scores here for complete cases, otherwise the minimum will be 0 where it should be 6.
Warning in scoreItems(keys = pcl.items_key_base, items =
coping.pcl.raw.id[pcl.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base_raw
N: 9580
pcl.sum_score_base_raw
--------------- ------------------------
Mean 12.00
Std.Dev 6.79
Min 0.00
Median 12.00
Max 30.00
N.Valid 9580.00
Pct.Valid 100.00Missingness
PCL missingness (NAs per person)
baseline
Frequencies
coping.pcl.raw.id$na_per_person_pcl_base
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 8342 87.08 87.08
1 39 0.41 0.41
2 10 0.10 0.10
3 25 0.26 0.26
4 23 0.24 0.24
5 21 0.22 0.22
6 1120 11.69 11.69
<NA> 0 0.00
Total 9580 100.00 100.00retrospective
Frequencies
coping.pcl.raw.id$na_per_person_pcl_retro
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 3800 39.67 39.67
1 1182 12.34 12.34
2 810 8.46 8.46
3 1105 11.53 11.53
4 664 6.93 6.93
5 443 4.62 4.62
6 1576 16.45 16.45
<NA> 0 0.00
Total 9580 100.00 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base_raw
N: 9580
pcl.sum_score_base_raw
--------------- ------------------------
Mean 12.00
Std.Dev 6.79
Min 0.00
Median 12.00
Max 30.00
N.Valid 9580.00
Pct.Valid 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_base
N: 9580
pcl.sum_score_base
--------------- --------------------
Mean 13.64
Std.Dev 5.51
Min 6.00
Median 13.00
Max 30.00
N.Valid 8342.00
Pct.Valid 87.08Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro_raw
N: 9580
pcl.sum_score_retro_raw
--------------- -------------------------
Mean 1.65
Std.Dev 1.58
Min 0.00
Median 1.00
Max 6.00
N.Valid 9580.00
Pct.Valid 100.00Descriptive Statistics
coping.pcl.raw.id$pcl.sum_score_retro
N: 9580
pcl.sum_score_retro
--------------- ---------------------
Mean 1.93
Std.Dev 1.76
Min 0.00
Median 2.00
Max 6.00
N.Valid 3800.00
Pct.Valid 39.67Inspection
COPING: PHQ
GLAD
Will need to double check these namings once we have the new cleaned data – KT.
EDGI
NBR
Will need to double check these namings once we have the new cleaned data – KT.
RAMP
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "phq.little_interest_or_pleasure_in_doing_things"
[6] "phq.feeling_down_depressed_or_hopeless"
[7] "phq.staying_asleep_sleeping_trouble"
[8] "phq.feeling_tired_or_having_little_energy"
[9] "phq.poor_appetite_or_overeating"
[10] "phq.failure_family_feeling_bad"
[11] "phq.trouble_concentrating_newspaper_reading"
[12] "phq.moving_fidgety_opposite_slowly"
[13] "phq.dead_hurting_thoughts"
[14] "phq.issues_made_carrying_daily"
[15] "phq.feelings_pandemic_felt"
[16] "phq.little_interest_or_pleasure_in_doing_things.1"
[17] "phq.feeling_down_depression_or_hopeless"
[18] "phq.staying_asleep_sleeping_trouble.1"
[19] "phq.feeling_tired_or_having_little_energy.1"
[20] "phq.poor_appetite_or_overeating.1"
[21] "phq.failure_family_feeling_bad.1"
[22] "phq.trouble_concentrating_newspaper_reading.1"
[23] "phq.moving_fidgety_opposite_slowly.1"
[24] "phq.dead_hurting_thoughts.1" Will need to double check these namings once we have the new cleaned data – KT.
[1] 34Sum scores
Calculate sum score for PHQ-9 retro
Warning in scoreItems(keys = phq.items_key_retro, items =
coping.phq.raw.id[phq.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro_raw
N: 9547
phq.sum_score_retro_raw
--------------- -------------------------
Mean 4.47
Std.Dev 5.41
Min 0.00
Median 3.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Calculate sum score for PHQ-9 base
Warning in scoreItems(keys = phq.items_key_base, items =
coping.phq.raw.id[phq.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base_raw
N: 9547
phq.sum_score_base_raw
--------------- ------------------------
Mean 9.30
Std.Dev 7.28
Min 0.00
Median 8.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Missingness
retrospective
Frequencies
coping.phq.raw.id$na_per_person_phq_retro
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 6703 70.21 70.21
1 16 0.17 0.17
2 1 0.01 0.01
5 2 0.02 0.02
7 2 0.02 0.02
8 1 0.01 0.01
9 2822 29.56 29.56
<NA> 0 0.00
Total 9547 100.00 100.00Frequencies
coping.phq.raw.id$phq.missing_only_suicide_item_retro
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 9542 99.95 99.95
1 5 0.05 0.05
<NA> 0 0.00
Total 9547 100.00 100.00baseline
Frequencies
coping.phq.raw.id$na_per_person_phq_base
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 8703 91.16 91.16
1 16 0.17 0.17
2 3 0.03 0.03
5 1 0.01 0.01
6 2 0.02 0.02
8 1 0.01 0.01
9 821 8.60 8.60
<NA> 0 0.00
Total 9547 100.00 100.00We need to identify those who have all items APART from the suicide ideation item - to still include these individuals.
Frequencies
coping.phq.raw.id$phq.missing_only_suicide_item_base
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 9539 99.92 99.92
1 8 0.08 0.08
<NA> 0 0.00
Total 9547 100.00 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base_raw
N: 9547
phq.sum_score_base_raw
--------------- ------------------------
Mean 9.30
Std.Dev 7.28
Min 0.00
Median 8.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_base
N: 9547
phq.sum_score_base
--------------- --------------------
Mean 10.17
Std.Dev 7.00
Min 0.00
Median 9.00
Max 27.00
N.Valid 8703.00
Pct.Valid 91.168 items
Descriptive Statistics
coping.phq.raw.id$phq.sum_score_8items_base
N: 9547
phq.sum_score_8items_base
--------------- ---------------------------
Mean 9.30
Std.Dev 7.28
Min 0.00
Median 8.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro_raw
N: 9547
phq.sum_score_retro_raw
--------------- -------------------------
Mean 4.47
Std.Dev 5.41
Min 0.00
Median 3.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Descriptive Statistics
coping.phq.raw.id$phq.sum_score_retro
N: 9547
phq.sum_score_retro
--------------- ---------------------
Mean 6.34
Std.Dev 5.44
Min 0.00
Median 5.00
Max 27.00
N.Valid 6703.00
Pct.Valid 70.218 items
Descriptive Statistics
coping.phq.raw.id$phq.sum_score_8items_retro
N: 9547
phq.sum_score_8items_retro
--------------- ----------------------------
Mean 4.47
Std.Dev 5.41
Min 0.00
Median 3.00
Max 27.00
N.Valid 9547.00
Pct.Valid 100.00Inspection
COPING: OCI-R
GLAD
*Note that the COPING GLAD OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
EDGI
*Note that the COPING EDGI OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
NBR
*Note that the COPING NBR OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
++MD: One NBR ID is being converted to NA by the as.numeric(ID) line of code.
RAMP
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "ocir.saved_things"
[6] "ocir.i_check_things_more_often_than_necessary."
[7] "ocir.arranged_properly_objects_upset"
[8] "ocir.feel_compelled_count_things"
[9] "ocir.touch_touched_strangers_object"
[10] "ocir.find_control_difficult_thoughts"
[11] "ocir.i_collect_things_i_dont_need."
[12] "ocir.i_repeatedly_check_doors_windows_drawers_etc."
[13] "ocir.arranged_things_change_upset"
[14] "ocir.feelings_pandemic_felt"
[15] "ocir.numbers_repeat_feel"
[16] "ocir.feel_contaminated_clean_simply"
[17] "ocir.unpleasant_thoughts_mind_upset"
[18] "ocir.afraid_avoid_throwing_things"
[19] "ocir.repeatedly_check_gas_water"
[20] "ocir.arranged_things"
[21] "ocir.bad_numbers_good_feel"
[22] "ocir.longer_hands_wash"
[23] "ocir.difficulty_rid_frequently_nasty"
[24] "ocir.saved_things.1"
[25] "ocir.i_check_things_more_often_than_necessary..1"
[26] "ocir.arranged_properly_objects_upset.1"
[27] "ocir.feel_compelled_count_things.1"
[28] "ocir.touch_touched_strangers_object.1"
[29] "ocir.find_control_difficult_thoughts.1"
[30] "ocir.i_collect_things_i_dont_need..1"
[31] "ocir.i_repeatedly_check_doors_windows_drawers_etc..1"
[32] "ocir.arranged_things_change_upset.1"
[33] "ocir.numbers_repeat_feel.1"
[34] "ocir.feel_contaminated_clean_simply.1"
[35] "ocir.unpleasant_thoughts_mind_upset.1"
[36] "ocir.afraid_avoid_throwing_things.1"
[37] "ocir.repeatedly_check_gas_water.1"
[38] "ocir.arranged_things.1"
[39] "ocir.bad_numbers_good_feel.1"
[40] "ocir.longer_hands_wash.1"
[41] "ocir.difficulty_rid_frequently_nasty.1" *Note that the COPING RAMP OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)
[1] 34Sum scores
Calculate sum score for OCI-R retro
Warning in scoreItems(keys = ocir.items_key_retro, items =
coping.ocir.raw.id[ocir.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro_raw
N: 9547
ocir.sum_score_retro_raw
--------------- --------------------------
Mean 8.41
Std.Dev 15.08
Min 0.00
Median 0.00
Max 86.00
N.Valid 9547.00
Pct.Valid 100.00Calculate sum score for OCI-R base
Warning in scoreItems(keys = ocir.items_key_base, items =
coping.ocir.raw.id[ocir.items_base], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base_raw
N: 9547
ocir.sum_score_base_raw
--------------- -------------------------
Mean 14.04
Std.Dev 19.78
Min 0.00
Median 0.00
Max 90.00
N.Valid 9547.00
Pct.Valid 100.00Missingness
retrospective
Frequencies
coping.ocir.raw.id$na_per_person_ocir_retro
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 2551 26.72 26.72
1 13 0.14 0.14
2 3 0.03 0.03
3 1 0.01 0.01
7 1 0.01 0.01
9 5 0.05 0.05
18 6973 73.04 73.04
<NA> 0 0.00
Total 9547 100.00 100.00baseline
Frequencies
coping.ocir.raw.id$na_per_person_ocir_base
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 3574 37.44 37.44
1 30 0.31 0.31
2 2 0.02 0.02
12 1 0.01 0.01
18 5940 62.22 62.22
<NA> 0 0.00
Total 9547 100.00 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base_raw
N: 9547
ocir.sum_score_base_raw
--------------- -------------------------
Mean 14.04
Std.Dev 19.78
Min 0.00
Median 0.00
Max 90.00
N.Valid 9547.00
Pct.Valid 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_base
N: 9547
ocir.sum_score_base
--------------- ---------------------
Mean 37.13
Std.Dev 13.28
Min 18.00
Median 34.00
Max 90.00
N.Valid 3574.00
Pct.Valid 37.44Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro_raw
N: 9547
ocir.sum_score_retro_raw
--------------- --------------------------
Mean 8.41
Std.Dev 15.08
Min 0.00
Median 0.00
Max 86.00
N.Valid 9547.00
Pct.Valid 100.00Descriptive Statistics
coping.ocir.raw.id$ocir.sum_score_retro
N: 9547
ocir.sum_score_retro
--------------- ----------------------
Mean 31.24
Std.Dev 11.51
Min 18.00
Median 28.00
Max 86.00
N.Valid 2551.00
Pct.Valid 26.72Inspection
Neurological symptoms
ALS (alsfrs)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "alsfrs.limb_weakness_past_month"
[6] "alsfrs.normal"
[7] "alsfrs.slow_or_sloppy_all_words_are_legible"
[8] "alsfrs.not_all_words_are_legible"
[9] "alsfrs.able_to_grip_pen"
[10] "alsfrs.unable_to_grip_pen"
[11] "alsfrs.na"
[12] "alsfrs.have_you_noticed_any_difficulty_walking"
[13] "alsfrs.do_you_have_any_difficulty_climbing_stairs"Select variables
[1] 34Epsworth sleep scale (ess)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "ess.felt_excessively_sleepy_day"
[6] "ess.sitting_and_reading"
[7] "ess.watching_tv"
[8] "ess.sitting_inactive_in_a_public_place"
[9] "ess.break_hour_passenger_car"
[10] "ess.afternoon_rest_circumstances_lying"
[11] "ess.sitting_and_talking_to_someone"
[12] "ess.sitting_quietly_after_a_lunch_without_alcohol"
[13] "ess.car_minutes_stopped_traffic" Select variables
[1] 34Migraines (midas)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "Login ID"
[5] "midas.headaches_suffered_past_month" "midas.scale_line_click_firmly"
[7] "midas.scale_line_click_firmly.1" "midas.scale_line_click_firmly.2"
[9] "midas.scale_line_click_firmly.3" "midas.scale_line_click_firmly.4" Select variables
[1] 34Loss of taste/smell (nmss)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "Login ID"
[5] "nmss.ability_taste_food_smell" "nmss.severe_taste_loss_smell" Select variables
[1] 34Non-motor symptoms (nmsw)
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "nmsw.drink_problems_choking_difficulty"
[6] "nmsw.night_regularly_pass_urine"
[7] "nmsw.sex_finding_difficult"
[8] "nmsw.weak_standing_dizzy_feeling"
[9] "nmsw.acting_moving_sleep_talking"
[10] "nmsw.double_vision" Select variables
[1] 34Tinnitus
GLAD
Read in data
Select variables
EDGI
Read in data
Select variables
NBR
Read in data
Select variables
RAMP
Read in data
[1] "externalDataReference" "startDate"
[3] "endDate" "Login ID"
[5] "tinnitus.ears_noises_minutes_head" "tinnitus.lasts_ears_noises_minutes"
[7] "tinnitus.noises_worry_worst_annoy" Select variables
[1] 34Join tibbles together
edgi data frame list
glad data frame list
Removing all prepandemic dataframes from NBR/RAMP (prepandemic measures don’t exist for these cohorts)
| Name | dat.raw |
| Number of rows | 9547 |
| Number of columns | 370 |
| _______________________ | |
| Column type frequency: | |
| character | 10 |
| factor | 161 |
| numeric | 198 |
| POSIXct | 1 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| Sample | 0 | 1 | 4 | 4 | 0 | 1 | 0 |
| ess.insomnia | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.narcolepsy | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.rem_sleep_behaviour_disorder | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.restless_legs_syndrome | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleep_apnea | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleep_terrors | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleepwalking | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.other | 9547 | 0 | NA | NA | 0 | 0 | 0 |
| ess.none | 9547 | 0 | NA | NA | 0 | 0 | 0 |
Variable type: factor
| skim_variable | n_missing | complete_rate | ordered | n_unique | top_counts |
|---|---|---|---|---|---|
| age_category | 805 | 0.92 | FALSE | 13 | 56-: 2250, 46-: 1554, 26-: 1076, 36-: 881 |
| Gender | 841 | 0.91 | FALSE | 4 | Fem: 6819, Mal: 1792, Non: 75, Pre: 20 |
| Transgender_uncleaned | 823 | 0.91 | FALSE | 2 | No: 8594, Yes: 130 |
| Ethnicity_unc | 855 | 0.91 | FALSE | 6 | Whi: 8258, Mix: 167, Asi: 158, Oth: 64 |
| Ethnicity | 855 | 0.91 | FALSE | 6 | Eur: 8258, Mix: 167, Asi: 158, Oth: 64 |
| employment.what_is_your_highest_level_of_education | 818 | 0.91 | FALSE | 7 | Bac: 2921, A-l: 1708, GCS: 1249, Mas: 1216 |
| employment.government_work_key_workers | 4446 | 0.53 | FALSE | 11 | Non: 2319, Hea: 1048, Edu: 702, Oth: 293 |
| employment.unemployed | 844 | 0.91 | FALSE | 2 | Not: 8195, Une: 508 |
| employment.zerohours_contract | 844 | 0.91 | FALSE | 2 | Not: 8472, Zer: 231 |
| employment.stayathome_parent_or_carer | 844 | 0.91 | FALSE | 2 | Not: 8433, Sta: 270 |
| employment.retired | 1270 | 0.87 | FALSE | 2 | Not: 6159, Ret: 2118 |
| employment.student_gcse_or_a_level | 844 | 0.91 | FALSE | 2 | Not: 8079, Stu: 624 |
| employment.student_university | 844 | 0.91 | FALSE | 2 | Not: 8125, Stu: 578 |
| employment.became_unemployed | 3479 | 0.64 | FALSE | 2 | Not: 5696, Bec: 372 |
| employment.furloughed_or_paid_leave_government_funded | 3479 | 0.64 | FALSE | 2 | Not: 5436, Fur: 632 |
| employment.furloughed_or_paid_leave_company_funded | 3479 | 0.64 | FALSE | 2 | Not: 5962, Fur: 106 |
| employment.paid_leave_furloughed | 3479 | 0.64 | FALSE | 2 | Not: 5844, Fur: 224 |
| highest_education | 1107 | 0.88 | FALSE | 3 | Uni: 5483, A-l: 1708, GCS: 1249 |
| key_worker | 862 | 0.91 | FALSE | 2 | No : 5903, Key: 2782 |
| anxiety_disorders | 1786 | 0.81 | FALSE | 2 | No : 4335, Anx: 3426 |
| mhd.specific_phobia_e.g._phobia_of_flying | 1786 | 0.81 | FALSE | 2 | Not: 7477, Spe: 284 |
| mhd.social_anxiety_or_social_phobia | 1786 | 0.81 | FALSE | 2 | Not: 6955, Soc: 806 |
| agoraphobia_panic_disorder | 1786 | 0.81 | FALSE | 2 | No : 6165, Ago: 1596 |
| depressive_disorders | 1786 | 0.81 | FALSE | 2 | Dep: 3936, No : 3825 |
| eating_disorders | 2288 | 0.76 | FALSE | 2 | No : 6757, Eat: 502 |
| obsessive_compulsive_disorders | 1786 | 0.81 | FALSE | 2 | No : 7138, Obs: 623 |
| psychotic_disorders | 2288 | 0.76 | FALSE | 2 | No : 7093, Psy: 166 |
| mhd.mania_hypomania_bipolar_or_manicdepression | 1786 | 0.81 | FALSE | 2 | Not: 7515, Man: 246 |
| mhd.posttraumatic_stress_disorder_ptsd | 1786 | 0.81 | FALSE | 2 | Not: 7051, Pos: 710 |
| autism_spectrum_disorder | 2288 | 0.76 | FALSE | 2 | No : 7058, Aut: 201 |
| mhd.attention_deficit_hyperactivity_disorder | 2288 | 0.76 | FALSE | 2 | Not: 7140, Att: 119 |
| mhd.personality_disorder | 2288 | 0.76 | FALSE | 2 | Not: 6961, Per: 298 |
| personality_cluster_a | 2312 | 0.76 | FALSE | 2 | No : 7224, Per: 11 |
| personality_cluster_b | 2312 | 0.76 | FALSE | 2 | No : 6988, Per: 247 |
| personality_cluster_c | 2312 | 0.76 | FALSE | 2 | No : 7219, Per: 16 |
| depression_and_anxiety | 1786 | 0.81 | FALSE | 4 | No : 3011, Dep: 2612, Onl: 1324, Onl: 814 |
| restricting_vs_binge_eating_eating_disorders | 2288 | 0.76 | FALSE | 3 | No : 6757, Ano: 298, Eat: 204 |
| bipolar_and_schizophrenia | 2295 | 0.76 | FALSE | 4 | No : 6939, Onl: 147, Onl: 86, Psy: 80 |
| control | 1822 | 0.81 | FALSE | 2 | No : 5128, Con: 2597 |
| comorbidity_total_count_factor | 5062 | 0.47 | FALSE | 4 | No : 1652, 1 c: 1643, 2 c: 638, 3+ : 552 |
| mhd.none_of_the_above | 1786 | 0.81 | FALSE | 2 | Not: 5043, Non: 2718 |
| mhd.none_of_the_above.1 | 2288 | 0.76 | FALSE | 2 | Non: 6010, Not: 1249 |
| gad.problems_made_difficult_care | 1567 | 0.84 | FALSE | 4 | Som: 4091, Not: 2543, Ver: 894, Ext: 452 |
| gad.pandemic_felt_feelings | 858 | 0.91 | FALSE | 5 | A l: 3596, Muc: 2360, No : 2166, A l: 364 |
| gad.feeling_nervous_anxious_or_on_edge_retro | 3032 | 0.68 | FALSE | 4 | Sev: 3320, Not: 2069, Mor: 755, Nea: 371 |
| gad.control_worrying_stop_retro | 3034 | 0.68 | FALSE | 4 | Sev: 2741, Not: 2722, Mor: 714, Nea: 336 |
| gad.worrying_too_much_about_different_things_retro | 3032 | 0.68 | FALSE | 4 | Sev: 3329, Not: 1898, Mor: 872, Nea: 416 |
| gad.trouble_relaxing_retro | 3032 | 0.68 | FALSE | 4 | Not: 2898, Sev: 2571, Mor: 684, Nea: 362 |
| gad.sit_restless_hard_retro | 3035 | 0.68 | FALSE | 4 | Not: 4576, Sev: 1395, Mor: 373, Nea: 168 |
| gad.becoming_easily_annoyed_or_irritable_retro | 3032 | 0.68 | FALSE | 4 | Sev: 3037, Not: 2326, Mor: 827, Nea: 325 |
| gad.awful_feeling_afraid_happen_retro | 3033 | 0.68 | FALSE | 4 | Not: 3731, Sev: 1888, Mor: 601, Nea: 294 |
| gad.feeling_nervous_anxious_or_on_edge_base | 823 | 0.91 | FALSE | 4 | Sev: 3203, Not: 2030, Nea: 1791, Mor: 1700 |
| gad.control_worrying_stop_base | 827 | 0.91 | FALSE | 4 | Not: 3090, Sev: 2669, Nea: 1501, Mor: 1460 |
| gad.worrying_too_much_about_different_things_base | 825 | 0.91 | FALSE | 4 | Sev: 3005, Not: 2456, Mor: 1639, Nea: 1622 |
| gad.trouble_relaxing_base | 826 | 0.91 | FALSE | 4 | Sev: 2901, Not: 2514, Mor: 1728, Nea: 1578 |
| gad.sit_restless_hard_base | 827 | 0.91 | FALSE | 4 | Not: 4915, Sev: 2204, Mor: 929, Nea: 672 |
| gad.becoming_easily_annoyed_or_irritable_base | 828 | 0.91 | FALSE | 4 | Sev: 3142, Not: 2352, Mor: 1741, Nea: 1484 |
| gad.awful_feeling_afraid_happen_base | 825 | 0.91 | FALSE | 4 | Not: 3202, Sev: 2606, Mor: 1478, Nea: 1436 |
| pcl.stressful_experience_repeated_images_base | 1167 | 0.88 | FALSE | 5 | Not: 3707, A l: 2061, Qui: 1135, Mod: 995 |
| pcl.stressful_experience_upset_reminded_base | 1173 | 0.88 | FALSE | 5 | Not: 3410, A l: 2301, Qui: 1076, Mod: 1061 |
| pcl.stressful_situation_avoiding_activities_base | 1216 | 0.87 | FALSE | 5 | Not: 5792, A l: 1215, Mod: 577, Qui: 483 |
| pcl.cut_people_feeling_distant_base | 1154 | 0.88 | FALSE | 5 | A l: 2252, Qui: 1855, Not: 1610, Mod: 1414 |
| pcl.feeling_irritable_or_having_angry_outbursts_base | 1155 | 0.88 | FALSE | 5 | A l: 2934, Not: 2550, Mod: 1260, Qui: 1193 |
| pcl.difficulty_concentrating_base | 1157 | 0.88 | FALSE | 5 | A l: 2490, Not: 2016, Qui: 1548, Mod: 1401 |
| pcl.stressful_experience_repeated_images_retro | 3934 | 0.59 | FALSE | 2 | No: 4590, Yes: 1023 |
| pcl.stressful_experience_upset_reminded_retro | 3709 | 0.61 | FALSE | 2 | No: 4696, Yes: 1142 |
| pcl.stressful_situation_avoiding_activities_retro | 5052 | 0.47 | FALSE | 2 | No: 3840, Yes: 655 |
| pcl.cut_people_feeling_distant_retro | 2206 | 0.77 | FALSE | 2 | Yes: 5318, No: 2023 |
| pcl.feeling_irritable_or_having_angry_outbursts_retro | 2890 | 0.70 | FALSE | 2 | Yes: 3696, No: 2961 |
| pcl.difficulty_concentrating_retro | 2576 | 0.73 | FALSE | 2 | Yes: 3932, No: 3039 |
| phq.problems_made_difficult_care | 1243 | 0.87 | FALSE | 4 | Som: 4136, Not: 2673, Ver: 1038, Ext: 457 |
| phq.pandemic_felt_feelings | 887 | 0.91 | FALSE | 5 | A l: 3785, Muc: 2290, No : 1927, A l: 417 |
| phq.little_interest_or_pleasure_in_doing_things_retro | 2826 | 0.70 | FALSE | 4 | Not: 3295, Sev: 2664, Mor: 508, Nea: 254 |
| phq.feeling_down_depressed_or_hopeless_retro | 2824 | 0.70 | FALSE | 4 | Sev: 3105, Not: 2679, Mor: 601, Nea: 338 |
| phq.staying_asleep_sleeping_trouble_retro | 2826 | 0.70 | FALSE | 4 | Sev: 2893, Not: 2235, Mor: 921, Nea: 672 |
| phq.feeling_tired_or_having_little_energy_retro | 2827 | 0.70 | FALSE | 4 | Sev: 3495, Not: 1561, Mor: 1013, Nea: 651 |
| phq.poor_appetite_or_overeating_retro | 2827 | 0.70 | FALSE | 4 | Not: 3304, Sev: 2180, Mor: 769, Nea: 467 |
| phq.feeling_bad_failure_family_retro | 2827 | 0.70 | FALSE | 4 | Not: 3315, Sev: 2236, Mor: 755, Nea: 414 |
| phq.trouble_concentrating_reading_newspaper_retro | 2829 | 0.70 | FALSE | 4 | Not: 3702, Sev: 2073, Mor: 625, Nea: 318 |
| phq.moving_fidgety_noticed_opposite_retro | 2830 | 0.70 | FALSE | 4 | Not: 5310, Sev: 979, Mor: 306, Nea: 122 |
| phq.dead_hurting_thoughts_retro | 2832 | 0.70 | FALSE | 4 | Not: 5154, Sev: 1020, Mor: 342, Nea: 199 |
| phq.little_interest_or_pleasure_in_doing_things_base | 823 | 0.91 | FALSE | 4 | Sev: 3393, Not: 2175, Nea: 1591, Mor: 1565 |
| phq.feeling_down_depressed_or_hopeless_base | 826 | 0.91 | FALSE | 4 | Sev: 3334, Not: 2602, Mor: 1411, Nea: 1374 |
| phq.staying_asleep_sleeping_trouble_base | 824 | 0.91 | FALSE | 4 | Nea: 2691, Sev: 2415, Not: 1840, Mor: 1777 |
| phq.feeling_tired_or_having_little_energy_base | 825 | 0.91 | FALSE | 4 | Sev: 3110, Nea: 2346, Mor: 1968, Not: 1298 |
| phq.poor_appetite_or_overeating_base | 825 | 0.91 | FALSE | 4 | Not: 2856, Sev: 2158, Nea: 1976, Mor: 1732 |
| phq.feeling_bad_failure_family_base | 826 | 0.91 | FALSE | 4 | Not: 3824, Sev: 2281, Nea: 1340, Mor: 1276 |
| phq.trouble_concentrating_reading_newspaper_base | 824 | 0.91 | FALSE | 4 | Not: 2962, Sev: 2660, Mor: 1683, Nea: 1418 |
| phq.moving_fidgety_noticed_opposite_base | 829 | 0.91 | FALSE | 4 | Not: 5944, Sev: 1534, Mor: 829, Nea: 411 |
| phq.dead_hurting_thoughts_base | 834 | 0.91 | FALSE | 4 | Not: 6391, Sev: 1222, Mor: 558, Nea: 542 |
| ocir.felt_pandemic_feelings | 5941 | 0.38 | FALSE | 5 | A l: 1746, No : 1029, Muc: 761, A l: 56 |
| ocir.saved_things_retro | 6979 | 0.27 | FALSE | 5 | Not: 1502, A l: 615, Mod: 230, A l: 171 |
| ocir.i_check_things_more_often_than_necessary_retro | 6975 | 0.27 | FALSE | 5 | Not: 1356, A l: 803, Mod: 241, A l: 133 |
| ocir.arranged_properly_objects_upset_retro | 6975 | 0.27 | FALSE | 5 | Not: 1228, A l: 819, Mod: 271, A l: 168 |
| ocir.feel_compelled_count_things_retro | 6975 | 0.27 | FALSE | 5 | Not: 1949, A l: 348, Mod: 126, A l: 96 |
| ocir.strangers_touch_touched_difficult_retro | 6975 | 0.27 | FALSE | 5 | Not: 1662, A l: 556, Mod: 190, A l: 100 |
| ocir.control_difficult_find_thoughts_retro | 6975 | 0.27 | FALSE | 5 | A l: 943, Not: 658, Mod: 449, A l: 321 |
| ocir.i_collect_things_i_dont_need_retro | 6976 | 0.27 | FALSE | 5 | Not: 1482, A l: 631, Mod: 225, A l: 153 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro | 6979 | 0.27 | FALSE | 5 | Not: 1715, A l: 522, Mod: 174, A l: 121 |
| ocir.arranged_things_change_upset_retro | 6980 | 0.27 | FALSE | 5 | Not: 1117, A l: 828, Mod: 294, A l: 184 |
| ocir.repeat_feel_numbers_retro | 6978 | 0.27 | FALSE | 5 | Not: 2209, A l: 203, Mod: 74, A l: 53 |
| ocir.clean_simply_wash_feel_retro | 6977 | 0.27 | FALSE | 5 | Not: 1684, A l: 595, Mod: 173, A l: 75 |
| ocir.mind_upset_unpleasant_thoughts_retro | 6977 | 0.27 | FALSE | 5 | A l: 958, Not: 723, Mod: 444, A l: 287 |
| ocir.afraid_avoid_throwing_things_retro | 6977 | 0.27 | FALSE | 5 | Not: 1239, A l: 786, Mod: 279, A l: 189 |
| ocir.light_switches_water_taps_retro | 6978 | 0.27 | FALSE | 5 | Not: 1859, A l: 457, Mod: 136, A l: 92 |
| ocir.arranged_things_retro | 6977 | 0.27 | FALSE | 5 | Not: 1241, A l: 790, Mod: 273, A l: 168 |
| ocir.good_feel_bad_numbers_retro | 6978 | 0.27 | FALSE | 5 | Not: 1963, A l: 323, Mod: 124, A l: 80 |
| ocir.hands_longer_wash_retro | 6977 | 0.27 | FALSE | 5 | Not: 1853, A l: 440, Mod: 147, A l: 88 |
| ocir.frequently_difficulty_rid_nasty_retro | 6980 | 0.27 | FALSE | 5 | Not: 915, A l: 847, Mod: 379, A l: 247 |
| ocir.saved_things_base | 5957 | 0.38 | FALSE | 5 | Not: 1694, A l: 833, Mod: 546, A l: 368 |
| ocir.i_check_things_more_often_than_necessary_base | 5941 | 0.38 | FALSE | 5 | A l: 1083, Not: 1080, Mod: 685, A l: 552 |
| ocir.arranged_properly_objects_upset_base | 5941 | 0.38 | FALSE | 5 | Not: 1543, A l: 952, Mod: 564, A l: 370 |
| ocir.feel_compelled_count_things_base | 5944 | 0.38 | FALSE | 5 | Not: 2366, A l: 566, Mod: 279, A l: 247 |
| ocir.strangers_touch_touched_difficult_base | 5941 | 0.38 | FALSE | 5 | Not: 1084, A l: 952, Mod: 563, A l: 563 |
| ocir.control_difficult_find_thoughts_base | 5941 | 0.38 | FALSE | 5 | A l: 1013, Mod: 731, A l: 728, Ext: 573 |
| ocir.i_collect_things_i_dont_need_base | 5943 | 0.38 | FALSE | 5 | Not: 1997, A l: 840, Mod: 351, A l: 250 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base | 5942 | 0.38 | FALSE | 5 | Not: 2244, A l: 688, Mod: 302, A l: 249 |
| ocir.arranged_things_change_upset_base | 5946 | 0.38 | FALSE | 5 | Not: 1347, A l: 1083, Mod: 479, A l: 379 |
| ocir.repeat_feel_numbers_base | 5942 | 0.38 | FALSE | 5 | Not: 2946, A l: 308, Mod: 152, A l: 124 |
| ocir.clean_simply_wash_feel_base | 5941 | 0.38 | FALSE | 5 | Not: 1331, A l: 1136, Mod: 586, A l: 367 |
| ocir.mind_upset_unpleasant_thoughts_base | 5942 | 0.38 | FALSE | 5 | A l: 1156, Mod: 695, Not: 684, A l: 603 |
| ocir.afraid_avoid_throwing_things_base | 5940 | 0.38 | FALSE | 5 | Not: 1585, A l: 980, Mod: 443, A l: 401 |
| ocir.light_switches_water_taps_base | 5941 | 0.38 | FALSE | 5 | Not: 2542, A l: 586, Mod: 229, A l: 167 |
| ocir.arranged_things_base | 5940 | 0.38 | FALSE | 5 | Not: 1642, A l: 1026, Mod: 420, A l: 327 |
| ocir.good_feel_bad_numbers_base | 5941 | 0.38 | FALSE | 5 | Not: 2650, A l: 398, Mod: 217, A l: 172 |
| ocir.hands_longer_wash_base | 5941 | 0.38 | FALSE | 5 | Not: 1871, A l: 784, Mod: 404, A l: 304 |
| ocir.frequently_difficulty_rid_nasty_base | 5942 | 0.38 | FALSE | 5 | Not: 1104, A l: 1045, Mod: 517, A l: 500 |
| alsfrs.limb_weakness_noticed_past | 1028 | 0.89 | FALSE | 2 | No: 7149, Yes: 1370 |
| alsfrs.normal | 8176 | 0.14 | FALSE | 2 | Nor: 967, Not: 404 |
| alsfrs.slow_or_sloppy_all_words_are_legible | 8176 | 0.14 | FALSE | 2 | Not: 1168, Slo: 203 |
| alsfrs.not_all_words_are_legible | 8176 | 0.14 | FALSE | 2 | Not: 1245, Not: 126 |
| alsfrs.able_to_grip_pen | 8176 | 0.14 | FALSE | 2 | Not: 1318, Abl: 53 |
| alsfrs.unable_to_grip_pen | 8176 | 0.14 | FALSE | 2 | Not: 1292, Una: 79 |
| alsfrs.have_you_noticed_any_difficulty_walking | 8177 | 0.14 | FALSE | 6 | Nor: 780, Ear: 436, Nee: 138, Abl: 8 |
| alsfrs.do_you_have_any_difficulty_climbing_stairs | 8173 | 0.14 | FALSE | 5 | Nor: 634, Slo: 311, Mil: 257, Nee: 114 |
| ess.felt_excessively_sleepy_past | 1035 | 0.89 | FALSE | 2 | No: 4687, Yes: 3825 |
| ess.sitting_and_reading | 5739 | 0.40 | FALSE | 4 | Sli: 1445, Mod: 1008, Wou: 793, Hig: 562 |
| ess.watching_tv | 5744 | 0.40 | FALSE | 4 | Sli: 1404, Mod: 1107, Hig: 663, Wou: 629 |
| ess.sitting_inactive_in_a_public_place | 5750 | 0.40 | FALSE | 4 | Wou: 2398, Sli: 930, Mod: 318, Hig: 151 |
| ess.break_passenger_car_hour | 5755 | 0.40 | FALSE | 4 | Sli: 1312, Wou: 1157, Mod: 760, Hig: 563 |
| ess.afternoon_rest_circumstances_lying | 5737 | 0.40 | FALSE | 4 | Hig: 1635, Mod: 1066, Sli: 814, Wou: 295 |
| ess.sitting_and_talking_to_someone | 5738 | 0.40 | FALSE | 4 | Wou: 3269, Sli: 423, Mod: 86, Hig: 31 |
| ess.sitting_quietly_after_a_lunch_without_alcohol | 5744 | 0.40 | FALSE | 4 | Wou: 1651, Sli: 1366, Mod: 526, Hig: 260 |
| ess.car_minutes_stopped_traffic | 5747 | 0.40 | FALSE | 4 | Wou: 3334, Sli: 354, Mod: 69, Hig: 43 |
| midas.headaches_suffered_past_month | 1035 | 0.89 | FALSE | 2 | No: 4329, Yes: 4183 |
| midas.days_past_month_miss_work_school | 9547 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_work_school_half_productivity | 9547 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_housework | 9547 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_housework_half_productivity | 9547 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_social_activities | 9547 | 0.00 | FALSE | 0 | Did: 0 |
| nmss.ability_taste_food_smell | 1043 | 0.89 | FALSE | 2 | No: 7902, Yes: 602 |
| nmss.severe_taste_smell_loss | 8945 | 0.06 | FALSE | 6 | Mil: 179, Mod: 131, Min: 117, Sev: 79 |
| nmsw.drink_problems_choking_difficulty | 1057 | 0.89 | FALSE | 2 | No: 7837, Yes: 653 |
| nmsw.regularly_night_pass_urine | 1058 | 0.89 | FALSE | 2 | No: 5090, Yes: 3399 |
| nmsw.sex_difficult_finding | 1245 | 0.87 | FALSE | 2 | No: 7350, Yes: 952 |
| nmsw.weak_standing_feeling_light | 1059 | 0.89 | FALSE | 2 | No: 5408, Yes: 3080 |
| nmsw.acting_moving_sleep_talking | 1081 | 0.89 | FALSE | 2 | No: 7014, Yes: 1452 |
| nmsw.double_vision | 1060 | 0.89 | FALSE | 2 | No: 7960, Yes: 527 |
| tinnitus.ears_noises_minutes_head | 1052 | 0.89 | FALSE | 2 | No: 6289, Yes: 2206 |
| tinnitus.ears_noises_minutes_head_frequency | 7341 | 0.23 | FALSE | 5 | Som: 950, Now: 706, Now: 345, Not: 189 |
| tinnitus.noises_worry_worst_upset | 7341 | 0.23 | FALSE | 4 | Sli: 1045, Mod: 586, Not: 470, Sev: 105 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| ID | 0 | 1.00 | 5.630956e+10 | 1.839951e+11 | 50 | 274012 | 553245 | 842773.5 | 999384675640 | ▇▁▁▁▁ |
| age_category_numeric | 805 | 0.92 | 4.820000e+00 | 2.060000e+00 | 1 | 3 | 5 | 6.0 | 13 | ▆▆▇▁▁ |
| Gender_numeric | 841 | 0.91 | 8.100000e-01 | 4.300000e-01 | 0 | 1 | 1 | 1.0 | 3 | ▂▇▁▁▁ |
| Transgender_uncleaned_numeric | 823 | 0.91 | 1.000000e-02 | 1.200000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| Ethnicity_numeric | 855 | 0.91 | 1.110000e+00 | 5.700000e-01 | 1 | 1 | 1 | 1.0 | 6 | ▇▁▁▁▁ |
| employment.what_is_your_highest_level_of_education_numeric | 818 | 0.91 | 2.910000e+00 | 1.420000e+00 | 0 | 2 | 3 | 4.0 | 6 | ▅▅▇▃▃ |
| employment.government_work_key_workers_numeric | 4446 | 0.53 | 1.960000e+00 | 3.050000e+00 | 0 | 0 | 1 | 2.0 | 11 | ▇▁▁▁▁ |
| employment.unemployed_numeric | 844 | 0.91 | 6.000000e-02 | 2.300000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.zerohours_contract_numeric | 844 | 0.91 | 3.000000e-02 | 1.600000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.stayathome_parent_or_carer_numeric | 844 | 0.91 | 3.000000e-02 | 1.700000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.retired_numeric | 1270 | 0.87 | 2.600000e-01 | 4.400000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▃ |
| employment.student_gcse_or_a_level_numeric | 844 | 0.91 | 7.000000e-02 | 2.600000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.student_university_numeric | 844 | 0.91 | 7.000000e-02 | 2.500000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.became_unemployed_numeric | 3479 | 0.64 | 6.000000e-02 | 2.400000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_government_funded_numeric | 3479 | 0.64 | 1.000000e-01 | 3.100000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_company_funded_numeric | 3479 | 0.64 | 2.000000e-02 | 1.300000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| employment.paid_leave_furloughed_numeric | 3479 | 0.64 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| highest_education_numeric | 818 | 0.91 | 3.410000e+00 | 1.080000e+00 | 1 | 3 | 4 | 4.0 | 5 | ▂▁▂▇▁ |
| key_worker_numeric | 862 | 0.91 | 3.200000e-01 | 4.700000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▃ |
| anxiety_disorders_numeric | 1786 | 0.81 | 4.400000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▆ |
| mhd.specific_phobia_e.g._phobia_of_flying_numeric | 1786 | 0.81 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| mhd.social_anxiety_or_social_phobia_numeric | 1786 | 0.81 | 1.000000e-01 | 3.100000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| agoraphobia_panic_disorder_numeric | 1786 | 0.81 | 2.100000e-01 | 4.000000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| depressive_disorders_numeric | 1786 | 0.81 | 5.100000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1.0 | 1 | ▇▁▁▁▇ |
| eating_disorders_numeric | 2288 | 0.76 | 7.000000e-02 | 2.500000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| obsessive_compulsive_disorders_numeric | 1786 | 0.81 | 8.000000e-02 | 2.700000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| psychotic_disorders_numeric | 2288 | 0.76 | 2.000000e-02 | 1.500000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| mhd.mania_hypomania_bipolar_or_manicdepression_numeric | 1786 | 0.81 | 3.000000e-02 | 1.800000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| mhd.posttraumatic_stress_disorder_ptsd_numeric | 1786 | 0.81 | 9.000000e-02 | 2.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| autism_spectrum_disorder_numeric | 2288 | 0.76 | 3.000000e-02 | 1.600000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| mhd.attention_deficit_hyperactivity_disorder_numeric | 2288 | 0.76 | 2.000000e-02 | 1.300000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| mhd.personality_disorder_numeric | 2288 | 0.76 | 4.000000e-02 | 2.000000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| personality_cluster_a_numeric | 2312 | 0.76 | 0.000000e+00 | 4.000000e-02 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| personality_cluster_b_numeric | 2312 | 0.76 | 3.000000e-02 | 1.800000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| personality_cluster_c_numeric | 2312 | 0.76 | 0.000000e+00 | 5.000000e-02 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| depression_and_anxiety_numeric | 1786 | 0.81 | 9.900000e-01 | 9.900000e-01 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▃▂ |
| restricting_vs_binge_eating_eating_disorders_numeric | 2288 | 0.76 | 1.000000e-01 | 3.800000e-01 | 0 | 0 | 0 | 0.0 | 2 | ▇▁▁▁▁ |
| bipolar_and_schizophrenia_numeric | 2295 | 0.76 | 1.000000e-01 | 4.800000e-01 | 0 | 0 | 0 | 0.0 | 3 | ▇▁▁▁▁ |
| control_numeric | 1822 | 0.81 | 3.400000e-01 | 4.700000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▅ |
| disorders_total_count | 2295 | 0.76 | 1.300000e+00 | 1.410000e+00 | 0 | 0 | 1 | 2.0 | 9 | ▇▅▁▁▁ |
| comorbidity_total_count_numeric | 5062 | 0.47 | 1.110000e+00 | 1.230000e+00 | 0 | 0 | 1 | 2.0 | 8 | ▇▂▁▁▁ |
| comorbidity_total_count_factor_numeric | 5062 | 0.47 | 1.020000e+00 | 1.000000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▃▃ |
| gad.problems_made_difficult_care_numeric | 1567 | 0.84 | 1.910000e+00 | 8.100000e-01 | 1 | 1 | 2 | 2.0 | 4 | ▅▇▁▂▁ |
| gad.pandemic_felt_feelings_numeric | 858 | 0.91 | 2.130000e+00 | 9.400000e-01 | 1 | 1 | 2 | 3.0 | 5 | ▅▇▅▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_retro_numeric | 3032 | 0.68 | 9.100000e-01 | 8.100000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▅▇▁▂▁ |
| gad.control_worrying_stop_retro_numeric | 3034 | 0.68 | 7.900000e-01 | 8.300000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▇▁▂▁ |
| gad.worrying_too_much_about_different_things_retro_numeric | 3032 | 0.68 | 9.700000e-01 | 8.200000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▅▇▁▂▁ |
| gad.trouble_relaxing_retro_numeric | 3032 | 0.68 | 7.700000e-01 | 8.500000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▇▁▂▁ |
| gad.sit_restless_hard_retro_numeric | 3035 | 0.68 | 4.100000e-01 | 7.100000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▂▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_retro_numeric | 3032 | 0.68 | 8.700000e-01 | 8.200000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▆▇▁▂▁ |
| gad.awful_feeling_afraid_happen_retro_numeric | 3033 | 0.68 | 6.100000e-01 | 8.300000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▅▁▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_base_numeric | 823 | 0.91 | 1.370000e+00 | 1.050000e+00 | 0 | 1 | 1 | 2.0 | 3 | ▅▇▁▅▅ |
| gad.control_worrying_stop_base_numeric | 827 | 0.91 | 1.160000e+00 | 1.090000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▃▃ |
| gad.worrying_too_much_about_different_things_base_numeric | 825 | 0.91 | 1.280000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▆▇▁▅▅ |
| gad.trouble_relaxing_base_numeric | 826 | 0.91 | 1.270000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▅▅ |
| gad.sit_restless_hard_base_numeric | 827 | 0.91 | 7.000000e-01 | 9.400000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▃▁▂▁ |
| gad.becoming_easily_annoyed_or_irritable_base_numeric | 828 | 0.91 | 1.270000e+00 | 1.040000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▆▇▁▅▃ |
| gad.awful_feeling_afraid_happen_base_numeric | 825 | 0.91 | 1.130000e+00 | 1.090000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▆▁▃▃ |
| gad.sum_score_retro_raw | 0 | 1.00 | 3.640000e+00 | 4.440000e+00 | 0 | 0 | 2 | 6.0 | 21 | ▇▂▁▁▁ |
| gad.sum_score_base_raw | 0 | 1.00 | 7.470000e+00 | 6.260000e+00 | 0 | 2 | 6 | 12.0 | 21 | ▇▅▃▂▂ |
| na_per_person_gad_base | 0 | 1.00 | 6.100000e-01 | 1.970000e+00 | 0 | 0 | 0 | 0.0 | 7 | ▇▁▁▁▁ |
| na_per_person_gad_retro | 0 | 1.00 | 2.220000e+00 | 3.260000e+00 | 0 | 0 | 0 | 7.0 | 7 | ▇▁▁▁▃ |
| gad.sum_score_base | 834 | 0.91 | 8.180000e+00 | 6.090000e+00 | 0 | 3 | 7 | 13.0 | 21 | ▇▆▃▃▃ |
| gad.sum_score_retro | 3037 | 0.68 | 5.340000e+00 | 4.460000e+00 | 0 | 2 | 4 | 7.0 | 21 | ▇▅▂▁▁ |
| pcl.stressful_experience_repeated_images_base_numeric | 1167 | 0.88 | 2.120000e+00 | 1.270000e+00 | 1 | 1 | 2 | 3.0 | 5 | ▇▅▂▂▁ |
| pcl.stressful_experience_upset_reminded_base_numeric | 1173 | 0.88 | 2.160000e+00 | 1.260000e+00 | 1 | 1 | 2 | 3.0 | 5 | ▇▆▂▂▁ |
| pcl.stressful_situation_avoiding_activities_base_numeric | 1216 | 0.87 | 1.590000e+00 | 1.050000e+00 | 1 | 1 | 1 | 2.0 | 5 | ▇▂▁▁▁ |
| pcl.cut_people_feeling_distant_base_numeric | 1154 | 0.88 | 2.870000e+00 | 1.360000e+00 | 1 | 2 | 3 | 4.0 | 5 | ▆▇▅▆▅ |
| pcl.feeling_irritable_or_having_angry_outbursts_base_numeric | 1155 | 0.88 | 2.290000e+00 | 1.190000e+00 | 1 | 1 | 2 | 3.0 | 5 | ▇▇▃▃▁ |
| pcl.difficulty_concentrating_base_numeric | 1157 | 0.88 | 2.630000e+00 | 1.320000e+00 | 1 | 2 | 2 | 4.0 | 5 | ▆▇▅▅▃ |
| pcl.stressful_experience_repeated_images_retro_numeric | 3934 | 0.59 | 1.800000e-01 | 3.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_experience_upset_reminded_retro_numeric | 3709 | 0.61 | 2.000000e-01 | 4.000000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_situation_avoiding_activities_retro_numeric | 5052 | 0.47 | 1.500000e-01 | 3.500000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| pcl.cut_people_feeling_distant_retro_numeric | 2206 | 0.77 | 7.200000e-01 | 4.500000e-01 | 0 | 0 | 1 | 1.0 | 1 | ▃▁▁▁▇ |
| pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric | 2890 | 0.70 | 5.600000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1.0 | 1 | ▆▁▁▁▇ |
| pcl.difficulty_concentrating_retro_numeric | 2576 | 0.73 | 5.600000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1.0 | 1 | ▆▁▁▁▇ |
| pcl.sum_score_retro_raw | 0 | 1.00 | 1.650000e+00 | 1.580000e+00 | 0 | 0 | 1 | 3.0 | 6 | ▇▃▃▁▁ |
| pcl.sum_score_base_raw | 0 | 1.00 | 1.199000e+01 | 6.790000e+00 | 0 | 8 | 12 | 16.0 | 30 | ▃▇▆▃▁ |
| na_per_person_pcl_base | 0 | 1.00 | 7.400000e-01 | 1.950000e+00 | 0 | 0 | 0 | 0.0 | 6 | ▇▁▁▁▁ |
| na_per_person_pcl_retro | 0 | 1.00 | 2.130000e+00 | 2.270000e+00 | 0 | 0 | 1 | 4.0 | 6 | ▇▁▂▁▃ |
| pcl.sum_score_base | 1233 | 0.87 | 1.364000e+01 | 5.510000e+00 | 6 | 9 | 13 | 17.0 | 30 | ▇▇▅▂▁ |
| pcl.sum_score_retro | 5757 | 0.40 | 1.930000e+00 | 1.760000e+00 | 0 | 0 | 2 | 3.0 | 6 | ▇▃▃▁▂ |
| phq.problems_made_difficult_care_numeric | 1243 | 0.87 | 1.910000e+00 | 8.100000e-01 | 1 | 1 | 2 | 2.0 | 4 | ▅▇▁▂▁ |
| phq.pandemic_felt_feelings_numeric | 887 | 0.91 | 2.140000e+00 | 9.500000e-01 | 1 | 1 | 2 | 3.0 | 5 | ▅▇▅▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_retro_numeric | 2826 | 0.70 | 6.600000e-01 | 7.800000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▆▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_retro_numeric | 2824 | 0.70 | 7.900000e-01 | 8.000000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▇▁▂▁ |
| phq.staying_asleep_sleeping_trouble_retro_numeric | 2826 | 0.70 | 1.000000e+00 | 9.300000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▆▇▁▂▂ |
| phq.feeling_tired_or_having_little_energy_retro_numeric | 2827 | 0.70 | 1.110000e+00 | 8.700000e-01 | 0 | 1 | 1 | 1.0 | 3 | ▃▇▁▂▂ |
| phq.poor_appetite_or_overeating_retro_numeric | 2827 | 0.70 | 7.600000e-01 | 9.100000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▅▁▂▁ |
| phq.feeling_bad_failure_family_retro_numeric | 2827 | 0.70 | 7.400000e-01 | 8.900000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▆▁▂▁ |
| phq.trouble_concentrating_reading_newspaper_retro_numeric | 2829 | 0.70 | 6.400000e-01 | 8.400000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▅▁▂▁ |
| phq.moving_fidgety_noticed_opposite_retro_numeric | 2830 | 0.70 | 2.900000e-01 | 6.400000e-01 | 0 | 0 | 0 | 0.0 | 3 | ▇▂▁▁▁ |
| phq.dead_hurting_thoughts_retro_numeric | 2832 | 0.70 | 3.400000e-01 | 7.100000e-01 | 0 | 0 | 0 | 0.0 | 3 | ▇▂▁▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_base_numeric | 823 | 0.91 | 1.290000e+00 | 1.040000e+00 | 0 | 1 | 1 | 2.0 | 3 | ▅▇▁▃▃ |
| phq.feeling_down_depressed_or_hopeless_base_numeric | 826 | 0.91 | 1.180000e+00 | 1.030000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▆▇▁▃▃ |
| phq.staying_asleep_sleeping_trouble_base_numeric | 824 | 0.91 | 1.610000e+00 | 1.130000e+00 | 0 | 1 | 2 | 3.0 | 3 | ▆▇▁▅▇ |
| phq.feeling_tired_or_having_little_energy_base_numeric | 825 | 0.91 | 1.610000e+00 | 1.040000e+00 | 0 | 1 | 1 | 3.0 | 3 | ▃▇▁▅▆ |
| phq.poor_appetite_or_overeating_base_numeric | 825 | 0.91 | 1.320000e+00 | 1.150000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▆▁▅▆ |
| phq.feeling_bad_failure_family_base_numeric | 826 | 0.91 | 1.020000e+00 | 1.100000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▅▁▃▃ |
| phq.trouble_concentrating_reading_newspaper_base_numeric | 824 | 0.91 | 1.180000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▅▃ |
| phq.moving_fidgety_noticed_opposite_base_numeric | 829 | 0.91 | 5.100000e-01 | 8.500000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▂▁▁▁ |
| phq.dead_hurting_thoughts_base_numeric | 834 | 0.91 | 4.500000e-01 | 8.700000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▂▁▁▁ |
| phq.sum_score_retro_raw | 0 | 1.00 | 4.470000e+00 | 5.410000e+00 | 0 | 0 | 3 | 7.0 | 27 | ▇▂▁▁▁ |
| phq.sum_score_base_raw | 0 | 1.00 | 9.300000e+00 | 7.280000e+00 | 0 | 3 | 8 | 14.0 | 27 | ▇▅▅▂▂ |
| na_per_person_phq_retro | 0 | 1.00 | 2.670000e+00 | 4.110000e+00 | 0 | 0 | 0 | 9.0 | 9 | ▇▁▁▁▃ |
| phq.missing_only_suicide_item_retro | 0 | 1.00 | 0.000000e+00 | 2.000000e-02 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| na_per_person_phq_base | 0 | 1.00 | 7.800000e-01 | 2.530000e+00 | 0 | 0 | 0 | 0.0 | 9 | ▇▁▁▁▁ |
| phq.missing_only_suicide_item_base | 0 | 1.00 | 0.000000e+00 | 3.000000e-02 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| phq.sum_score_base | 844 | 0.91 | 1.017000e+01 | 7.000000e+00 | 0 | 4 | 9 | 15.0 | 27 | ▇▆▆▃▂ |
| phq.sum_score_8items_base | 0 | 1.00 | 9.300000e+00 | 7.280000e+00 | 0 | 3 | 8 | 14.0 | 27 | ▇▅▅▂▂ |
| phq.sum_score_retro | 2844 | 0.70 | 6.340000e+00 | 5.440000e+00 | 0 | 2 | 5 | 9.0 | 27 | ▇▃▂▁▁ |
| phq.sum_score_8items_retro | 0 | 1.00 | 4.470000e+00 | 5.410000e+00 | 0 | 0 | 3 | 7.0 | 27 | ▇▂▁▁▁ |
| ocir.felt_pandemic_feelings_numeric | 5941 | 0.38 | 2.120000e+00 | 7.600000e-01 | 1 | 2 | 2 | 3.0 | 5 | ▃▇▅▁▁ |
| ocir.saved_things_retro_numeric | 6979 | 0.27 | 7.000000e-01 | 1.010000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_retro_numeric | 6975 | 0.27 | 7.200000e-01 | 9.400000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▅▂▁▁ |
| ocir.arranged_properly_objects_upset_retro_numeric | 6975 | 0.27 | 8.600000e-01 | 1.060000e+00 | 0 | 0 | 1 | 1.0 | 4 | ▇▆▂▁▁ |
| ocir.feel_compelled_count_things_retro_numeric | 6975 | 0.27 | 4.300000e-01 | 9.000000e-01 | 0 | 0 | 0 | 0.0 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_retro_numeric | 6975 | 0.27 | 5.800000e-01 | 9.600000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▃▁▁▁ |
| ocir.control_difficult_find_thoughts_retro_numeric | 6975 | 0.27 | 1.400000e+00 | 1.210000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▆▇▃▃▂ |
| ocir.i_collect_things_i_dont_need_retro_numeric | 6976 | 0.27 | 7.200000e-01 | 1.050000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▃▁▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric | 6979 | 0.27 | 5.400000e-01 | 9.100000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_retro_numeric | 6980 | 0.27 | 9.900000e-01 | 1.160000e+00 | 0 | 0 | 1 | 1.0 | 4 | ▇▆▂▁▁ |
| ocir.repeat_feel_numbers_retro_numeric | 6978 | 0.27 | 2.500000e-01 | 7.100000e-01 | 0 | 0 | 0 | 0.0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_retro_numeric | 6977 | 0.27 | 5.200000e-01 | 8.700000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▃▁▁▁ |
| ocir.mind_upset_unpleasant_thoughts_retro_numeric | 6977 | 0.27 | 1.300000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▆▇▃▂▁ |
| ocir.afraid_avoid_throwing_things_retro_numeric | 6977 | 0.27 | 8.600000e-01 | 1.070000e+00 | 0 | 0 | 1 | 1.0 | 4 | ▇▅▂▁▁ |
| ocir.light_switches_water_taps_retro_numeric | 6978 | 0.27 | 4.300000e-01 | 8.300000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_retro_numeric | 6977 | 0.27 | 8.700000e-01 | 1.080000e+00 | 0 | 0 | 1 | 1.0 | 4 | ▇▅▂▁▁ |
| ocir.good_feel_bad_numbers_retro_numeric | 6978 | 0.27 | 4.400000e-01 | 9.500000e-01 | 0 | 0 | 0 | 0.0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_retro_numeric | 6977 | 0.27 | 4.500000e-01 | 8.700000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.frequently_difficulty_rid_nasty_retro_numeric | 6980 | 0.27 | 1.190000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▇▃▂▂ |
| ocir.saved_things_base_numeric | 5957 | 0.38 | 1.010000e+00 | 1.190000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▃▂▂▁ |
| ocir.i_check_things_more_often_than_necessary_base_numeric | 5941 | 0.38 | 1.370000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▇▅▅▂ |
| ocir.arranged_properly_objects_upset_base_numeric | 5941 | 0.38 | 1.080000e+00 | 1.200000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▅▃▂▁ |
| ocir.feel_compelled_count_things_base_numeric | 5944 | 0.38 | 6.800000e-01 | 1.130000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_base_numeric | 5941 | 0.38 | 1.540000e+00 | 1.380000e+00 | 0 | 0 | 1 | 3.0 | 4 | ▇▇▅▅▃ |
| ocir.control_difficult_find_thoughts_base_numeric | 5941 | 0.38 | 1.930000e+00 | 1.320000e+00 | 0 | 1 | 2 | 3.0 | 4 | ▅▇▆▆▅ |
| ocir.i_collect_things_i_dont_need_base_numeric | 5943 | 0.38 | 8.200000e-01 | 1.150000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▃▂▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric | 5942 | 0.38 | 7.000000e-01 | 1.090000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_base_numeric | 5946 | 0.38 | 1.230000e+00 | 1.290000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▆▃▂▂ |
| ocir.repeat_feel_numbers_base_numeric | 5942 | 0.38 | 3.600000e-01 | 8.800000e-01 | 0 | 0 | 0 | 0.0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_base_numeric | 5941 | 0.38 | 1.150000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▇▃▂▁ |
| ocir.mind_upset_unpleasant_thoughts_base_numeric | 5942 | 0.38 | 1.730000e+00 | 1.300000e+00 | 0 | 1 | 1 | 3.0 | 4 | ▅▇▅▅▃ |
| ocir.afraid_avoid_throwing_things_base_numeric | 5940 | 0.38 | 1.070000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▅▂▂▁ |
| ocir.light_switches_water_taps_base_numeric | 5941 | 0.38 | 5.200000e-01 | 9.600000e-01 | 0 | 0 | 0 | 1.0 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_base_numeric | 5940 | 0.38 | 1.000000e+00 | 1.190000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▅▂▂▁ |
| ocir.good_feel_bad_numbers_base_numeric | 5941 | 0.38 | 5.600000e-01 | 1.100000e+00 | 0 | 0 | 0 | 1.0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_base_numeric | 5941 | 0.38 | 9.600000e-01 | 1.250000e+00 | 0 | 0 | 0 | 2.0 | 4 | ▇▃▂▁▁ |
| ocir.frequently_difficulty_rid_nasty_base_numeric | 5942 | 0.38 | 1.480000e+00 | 1.370000e+00 | 0 | 0 | 1 | 3.0 | 4 | ▇▇▃▃▃ |
| ocir.sum_score_retro_raw | 0 | 1.00 | 8.410000e+00 | 1.508000e+01 | 0 | 0 | 0 | 19.0 | 86 | ▇▂▁▁▁ |
| ocir.sum_score_base_raw | 0 | 1.00 | 1.404000e+01 | 1.978000e+01 | 0 | 0 | 0 | 29.0 | 90 | ▇▃▂▁▁ |
| na_per_person_ocir_retro | 0 | 1.00 | 1.315000e+01 | 7.980000e+00 | 0 | 0 | 18 | 18.0 | 18 | ▃▁▁▁▇ |
| na_per_person_ocir_base | 0 | 1.00 | 1.120000e+01 | 8.720000e+00 | 0 | 0 | 18 | 18.0 | 18 | ▅▁▁▁▇ |
| ocir.sum_score_base | 5973 | 0.37 | 3.713000e+01 | 1.328000e+01 | 18 | 27 | 34 | 44.0 | 90 | ▇▆▂▁▁ |
| ocir.sum_score_retro | 6996 | 0.27 | 3.124000e+01 | 1.151000e+01 | 18 | 23 | 28 | 37.0 | 86 | ▇▃▁▁▁ |
| alsfrs.limb_weakness_noticed_past_numeric | 1028 | 0.89 | 1.600000e-01 | 3.700000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| alsfrs.normal_numeric | 8176 | 0.14 | 7.100000e-01 | 4.600000e-01 | 0 | 0 | 1 | 1.0 | 1 | ▃▁▁▁▇ |
| alsfrs.slow_or_sloppy_all_words_are_legible_numeric | 8176 | 0.14 | 1.500000e-01 | 3.600000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| alsfrs.not_all_words_are_legible_numeric | 8176 | 0.14 | 9.000000e-02 | 2.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| alsfrs.able_to_grip_pen_numeric | 8176 | 0.14 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| alsfrs.unable_to_grip_pen_numeric | 8176 | 0.14 | 6.000000e-02 | 2.300000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| alsfrs.have_you_noticed_any_difficulty_walking_numeric | 8177 | 0.14 | 5.600000e-01 | 7.500000e-01 | 0 | 0 | 0 | 1.0 | 5 | ▇▁▁▁▁ |
| alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric | 8173 | 0.14 | 1.020000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2.0 | 4 | ▇▃▃▂▁ |
| ess.felt_excessively_sleepy_past_numeric | 1035 | 0.89 | 4.500000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▆ |
| ess.sitting_and_reading_numeric | 5739 | 0.40 | 1.350000e+00 | 9.700000e-01 | 0 | 1 | 1 | 2.0 | 3 | ▅▇▁▆▃ |
| ess.watching_tv_numeric | 5744 | 0.40 | 1.470000e+00 | 9.600000e-01 | 0 | 1 | 1 | 2.0 | 3 | ▃▇▁▆▃ |
| ess.sitting_inactive_in_a_public_place_numeric | 5750 | 0.40 | 5.300000e-01 | 8.100000e-01 | 0 | 0 | 0 | 1.0 | 3 | ▇▃▁▁▁ |
| ess.break_passenger_car_hour_numeric | 5755 | 0.40 | 1.190000e+00 | 1.030000e+00 | 0 | 0 | 1 | 2.0 | 3 | ▇▇▁▅▃ |
| ess.afternoon_rest_circumstances_lying_numeric | 5737 | 0.40 | 2.060000e+00 | 9.700000e-01 | 0 | 1 | 2 | 3.0 | 3 | ▂▃▁▅▇ |
| ess.sitting_and_talking_to_someone_numeric | 5738 | 0.40 | 1.800000e-01 | 4.900000e-01 | 0 | 0 | 0 | 0.0 | 3 | ▇▁▁▁▁ |
| ess.sitting_quietly_after_a_lunch_without_alcohol_numeric | 5744 | 0.40 | 8.400000e-01 | 9.100000e-01 | 0 | 0 | 1 | 1.0 | 3 | ▇▆▁▂▁ |
| ess.car_minutes_stopped_traffic_numeric | 5747 | 0.40 | 1.600000e-01 | 4.900000e-01 | 0 | 0 | 0 | 0.0 | 3 | ▇▁▁▁▁ |
| ess.insomnia_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.narcolepsy_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.rem_sleep_behaviour_disorder_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.restless_legs_syndrome_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleep_apnea_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleep_terrors_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleepwalking_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.other_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.none_numeric | 9547 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| midas.headaches_suffered_past_month_numeric | 1035 | 0.89 | 4.900000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▇ |
| midas.days_past_month_miss_work_school_numeric | 5717 | 0.40 | 1.370000e+00 | 4.190000e+00 | 0 | 0 | 0 | 0.0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_work_school_half_productivity_numeric | 5759 | 0.40 | 2.720000e+00 | 5.300000e+00 | 0 | 0 | 0 | 3.0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_housework_numeric | 5628 | 0.41 | 4.200000e+00 | 6.250000e+00 | 0 | 0 | 2 | 5.0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_housework_half_productivity_numeric | 5661 | 0.41 | 4.440000e+00 | 6.640000e+00 | 0 | 0 | 2 | 6.0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_social_activities_numeric | 5803 | 0.39 | 2.310000e+00 | 5.320000e+00 | 0 | 0 | 0 | 2.0 | 31 | ▇▁▁▁▁ |
| nmss.ability_taste_food_smell_numeric | 1043 | 0.89 | 7.000000e-02 | 2.600000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| nmss.severe_taste_smell_loss_numeric | 8945 | 0.06 | 2.370000e+00 | 1.360000e+00 | 0 | 1 | 2 | 3.0 | 5 | ▇▇▆▃▂ |
| nmsw.drink_problems_choking_difficulty_numeric | 1057 | 0.89 | 8.000000e-02 | 2.700000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| nmsw.regularly_night_pass_urine_numeric | 1058 | 0.89 | 4.000000e-01 | 4.900000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▆ |
| nmsw.sex_difficult_finding_numeric | 1245 | 0.87 | 1.100000e-01 | 3.200000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| nmsw.weak_standing_feeling_light_numeric | 1059 | 0.89 | 3.600000e-01 | 4.800000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▅ |
| nmsw.acting_moving_sleep_talking_numeric | 1081 | 0.89 | 1.700000e-01 | 3.800000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▂ |
| nmsw.double_vision_numeric | 1060 | 0.89 | 6.000000e-02 | 2.400000e-01 | 0 | 0 | 0 | 0.0 | 1 | ▇▁▁▁▁ |
| tinnitus.ears_noises_minutes_head_numeric | 1052 | 0.89 | 2.600000e-01 | 4.400000e-01 | 0 | 0 | 0 | 1.0 | 1 | ▇▁▁▁▃ |
| tinnitus.ears_noises_minutes_head_frequency_numeric | 7341 | 0.23 | 2.700000e+00 | 1.030000e+00 | 0 | 2 | 2 | 4.0 | 4 | ▁▂▇▃▆ |
| tinnitus.noises_worry_worst_upset_numeric | 7341 | 0.23 | 1.150000e+00 | 8.000000e-01 | 0 | 1 | 1 | 2.0 | 3 | ▃▇▁▅▁ |
Variable type: POSIXct
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| startDate.coping | 0 | 1 | 2020-04-07 10:10:40 | 2020-08-04 14:44:35 | 2020-04-24 17:30:18 | 9535 |
Check duplicates again to be saved +++KLP: RAMP: More than one column: Age, Sex, Login ID; if they match on all 3 then we treat them as a duplicate; otherwise we are going to rename the Login ID +++KT: No duplicates identified by ID in GLAD. +++MD: Duplicates have been removed in cleaning script for NBR. No duplicates at this stage.
FALSE
9547 #Exclusion Exclude those without sex, gender, age and incomplete PHQ/GAD items Create a new new object for each exclusion step, e.g., data.no_sex, data.no_gender and data.no_sex.no_age
[1] 9547 371[1] 8706 371[1] 841841 were excluded because they did not report their sex
[1] 8706 371[1] 8705 371[1] 1dim(dat.no.sex.no.gender)[1]-dim(dat.no.sex.no.gender.no.age)[1] were excluded because they did not report their age
Exclusion of inflammatory bowel disease (IBD) and GLAD BioResource (NBR) cohort ++MD: 3,410 participants from NBR IBD cohort excluded ++KT: 3 duplicated GLAD participants are excluded
##Create tidy data on which the exclusion criteria have been applied Complete sex, gender, age and missingness information applied.
| Name | dat |
| Number of rows | 8705 |
| Number of columns | 371 |
| _______________________ | |
| Column type frequency: | |
| character | 10 |
| factor | 161 |
| logical | 1 |
| numeric | 198 |
| POSIXct | 1 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| Sample | 0 | 1 | 4 | 4 | 0 | 1 | 0 |
| ess.insomnia | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.narcolepsy | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.rem_sleep_behaviour_disorder | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.restless_legs_syndrome | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleep_apnea | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleep_terrors | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.sleepwalking | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.other | 8705 | 0 | NA | NA | 0 | 0 | 0 |
| ess.none | 8705 | 0 | NA | NA | 0 | 0 | 0 |
Variable type: factor
| skim_variable | n_missing | complete_rate | ordered | n_unique | top_counts |
|---|---|---|---|---|---|
| age_category | 0 | 1.00 | FALSE | 13 | 56-: 2243, 46-: 1547, 26-: 1070, 36-: 879 |
| Gender | 0 | 1.00 | FALSE | 4 | Fem: 6818, Mal: 1792, Non: 75, Pre: 20 |
| Transgender_uncleaned | 13 | 1.00 | FALSE | 2 | No: 8566, Yes: 126 |
| Ethnicity_unc | 43 | 1.00 | FALSE | 6 | Whi: 8230, Mix: 165, Asi: 158, Oth: 64 |
| Ethnicity | 43 | 1.00 | FALSE | 6 | Eur: 8230, Mix: 165, Asi: 158, Oth: 64 |
| employment.what_is_your_highest_level_of_education | 9 | 1.00 | FALSE | 7 | Bac: 2914, A-l: 1698, GCS: 1247, Mas: 1212 |
| employment.government_work_key_workers | 3621 | 0.58 | FALSE | 11 | Non: 2309, Hea: 1047, Edu: 699, Oth: 293 |
| employment.unemployed | 36 | 1.00 | FALSE | 2 | Not: 8166, Une: 503 |
| employment.zerohours_contract | 36 | 1.00 | FALSE | 2 | Not: 8439, Zer: 230 |
| employment.stayathome_parent_or_carer | 36 | 1.00 | FALSE | 2 | Not: 8399, Sta: 270 |
| employment.retired | 459 | 0.95 | FALSE | 2 | Not: 6133, Ret: 2113 |
| employment.student_gcse_or_a_level | 36 | 1.00 | FALSE | 2 | Not: 8051, Stu: 618 |
| employment.student_university | 36 | 1.00 | FALSE | 2 | Not: 8093, Stu: 576 |
| employment.became_unemployed | 2661 | 0.69 | FALSE | 2 | Not: 5672, Bec: 372 |
| employment.furloughed_or_paid_leave_government_funded | 2661 | 0.69 | FALSE | 2 | Not: 5412, Fur: 632 |
| employment.furloughed_or_paid_leave_company_funded | 2661 | 0.69 | FALSE | 2 | Not: 5939, Fur: 105 |
| employment.paid_leave_furloughed | 2661 | 0.69 | FALSE | 2 | Not: 5823, Fur: 221 |
| highest_education | 294 | 0.97 | FALSE | 3 | Uni: 5466, A-l: 1698, GCS: 1247 |
| key_worker | 54 | 0.99 | FALSE | 2 | No : 5876, Key: 2775 |
| anxiety_disorders | 979 | 0.89 | FALSE | 2 | No : 4310, Anx: 3416 |
| mhd.specific_phobia_e.g._phobia_of_flying | 979 | 0.89 | FALSE | 2 | Not: 7444, Spe: 282 |
| mhd.social_anxiety_or_social_phobia | 979 | 0.89 | FALSE | 2 | Not: 6923, Soc: 803 |
| agoraphobia_panic_disorder | 979 | 0.89 | FALSE | 2 | No : 6135, Ago: 1591 |
| depressive_disorders | 979 | 0.89 | FALSE | 2 | Dep: 3917, No : 3809 |
| eating_disorders | 1473 | 0.83 | FALSE | 2 | No : 6732, Eat: 500 |
| obsessive_compulsive_disorders | 979 | 0.89 | FALSE | 2 | No : 7106, Obs: 620 |
| psychotic_disorders | 1473 | 0.83 | FALSE | 2 | No : 7066, Psy: 166 |
| mhd.mania_hypomania_bipolar_or_manicdepression | 979 | 0.89 | FALSE | 2 | Not: 7482, Man: 244 |
| mhd.posttraumatic_stress_disorder_ptsd | 979 | 0.89 | FALSE | 2 | Not: 7017, Pos: 709 |
| autism_spectrum_disorder | 1473 | 0.83 | FALSE | 2 | No : 7033, Aut: 199 |
| mhd.attention_deficit_hyperactivity_disorder | 1473 | 0.83 | FALSE | 2 | Not: 7113, Att: 119 |
| mhd.personality_disorder | 1473 | 0.83 | FALSE | 2 | Not: 6936, Per: 296 |
| personality_cluster_a | 1497 | 0.83 | FALSE | 2 | No : 7198, Per: 10 |
| personality_cluster_b | 1497 | 0.83 | FALSE | 2 | No : 6962, Per: 246 |
| personality_cluster_c | 1497 | 0.83 | FALSE | 2 | No : 7192, Per: 16 |
| depression_and_anxiety | 979 | 0.89 | FALSE | 4 | No : 2996, Dep: 2603, Onl: 1314, Onl: 813 |
| restricting_vs_binge_eating_eating_disorders | 1473 | 0.83 | FALSE | 3 | No : 6732, Ano: 297, Eat: 203 |
| bipolar_and_schizophrenia | 1480 | 0.83 | FALSE | 4 | No : 6913, Onl: 146, Onl: 86, Psy: 80 |
| control | 1015 | 0.88 | FALSE | 2 | No : 5101, Con: 2589 |
| comorbidity_total_count_factor | 4235 | 0.51 | FALSE | 4 | No : 1647, 1 c: 1634, 2 c: 638, 3+ : 551 |
| mhd.none_of_the_above | 979 | 0.89 | FALSE | 2 | Not: 5018, Non: 2708 |
| mhd.none_of_the_above.1 | 1473 | 0.83 | FALSE | 2 | Non: 5993, Not: 1239 |
| gad.problems_made_difficult_care | 756 | 0.91 | FALSE | 4 | Som: 4079, Not: 2530, Ver: 888, Ext: 452 |
| gad.pandemic_felt_feelings | 49 | 0.99 | FALSE | 5 | A l: 3581, Muc: 2352, No : 2158, A l: 364 |
| gad.feeling_nervous_anxious_or_on_edge_retro | 2214 | 0.75 | FALSE | 4 | Sev: 3308, Not: 2062, Mor: 752, Nea: 369 |
| gad.control_worrying_stop_retro | 2216 | 0.75 | FALSE | 4 | Sev: 2733, Not: 2711, Mor: 711, Nea: 334 |
| gad.worrying_too_much_about_different_things_retro | 2214 | 0.75 | FALSE | 4 | Sev: 3320, Not: 1888, Mor: 869, Nea: 414 |
| gad.trouble_relaxing_retro | 2214 | 0.75 | FALSE | 4 | Not: 2887, Sev: 2562, Mor: 684, Nea: 358 |
| gad.sit_restless_hard_retro | 2217 | 0.75 | FALSE | 4 | Not: 4559, Sev: 1392, Mor: 371, Nea: 166 |
| gad.becoming_easily_annoyed_or_irritable_retro | 2214 | 0.75 | FALSE | 4 | Sev: 3025, Not: 2318, Mor: 824, Nea: 324 |
| gad.awful_feeling_afraid_happen_retro | 2215 | 0.75 | FALSE | 4 | Not: 3717, Sev: 1881, Mor: 599, Nea: 293 |
| gad.feeling_nervous_anxious_or_on_edge_base | 14 | 1.00 | FALSE | 4 | Sev: 3191, Not: 2023, Nea: 1786, Mor: 1691 |
| gad.control_worrying_stop_base | 18 | 1.00 | FALSE | 4 | Not: 3075, Sev: 2661, Nea: 1495, Mor: 1456 |
| gad.worrying_too_much_about_different_things_base | 16 | 1.00 | FALSE | 4 | Sev: 2993, Not: 2444, Mor: 1635, Nea: 1617 |
| gad.trouble_relaxing_base | 17 | 1.00 | FALSE | 4 | Sev: 2890, Not: 2502, Mor: 1722, Nea: 1574 |
| gad.sit_restless_hard_base | 18 | 1.00 | FALSE | 4 | Not: 4897, Sev: 2195, Mor: 927, Nea: 668 |
| gad.becoming_easily_annoyed_or_irritable_base | 19 | 1.00 | FALSE | 4 | Sev: 3128, Not: 2343, Mor: 1739, Nea: 1476 |
| gad.awful_feeling_afraid_happen_base | 16 | 1.00 | FALSE | 4 | Not: 3188, Sev: 2594, Mor: 1474, Nea: 1433 |
| pcl.stressful_experience_repeated_images_base | 358 | 0.96 | FALSE | 5 | Not: 3691, A l: 2056, Qui: 1129, Mod: 990 |
| pcl.stressful_experience_upset_reminded_base | 364 | 0.96 | FALSE | 5 | Not: 3395, A l: 2292, Qui: 1072, Mod: 1058 |
| pcl.stressful_situation_avoiding_activities_base | 407 | 0.95 | FALSE | 5 | Not: 5773, A l: 1207, Mod: 574, Qui: 481 |
| pcl.cut_people_feeling_distant_base | 344 | 0.96 | FALSE | 5 | A l: 2246, Qui: 1844, Not: 1603, Mod: 1409 |
| pcl.feeling_irritable_or_having_angry_outbursts_base | 345 | 0.96 | FALSE | 5 | A l: 2924, Not: 2542, Mod: 1252, Qui: 1191 |
| pcl.difficulty_concentrating_base | 347 | 0.96 | FALSE | 5 | A l: 2479, Not: 2011, Qui: 1543, Mod: 1394 |
| pcl.stressful_experience_repeated_images_retro | 3111 | 0.64 | FALSE | 2 | No: 4573, Yes: 1021 |
| pcl.stressful_experience_upset_reminded_retro | 2889 | 0.67 | FALSE | 2 | No: 4675, Yes: 1141 |
| pcl.stressful_situation_avoiding_activities_retro | 4226 | 0.51 | FALSE | 2 | No: 3826, Yes: 653 |
| pcl.cut_people_feeling_distant_retro | 1394 | 0.84 | FALSE | 2 | Yes: 5293, No: 2018 |
| pcl.feeling_irritable_or_having_angry_outbursts_retro | 2075 | 0.76 | FALSE | 2 | Yes: 3679, No: 2951 |
| pcl.difficulty_concentrating_retro | 1764 | 0.80 | FALSE | 2 | Yes: 3914, No: 3027 |
| phq.problems_made_difficult_care | 435 | 0.95 | FALSE | 4 | Som: 4123, Not: 2662, Ver: 1031, Ext: 454 |
| phq.pandemic_felt_feelings | 79 | 0.99 | FALSE | 5 | A l: 3770, Muc: 2280, No : 1921, A l: 416 |
| phq.little_interest_or_pleasure_in_doing_things_retro | 2011 | 0.77 | FALSE | 4 | Not: 3282, Sev: 2654, Mor: 506, Nea: 252 |
| phq.feeling_down_depressed_or_hopeless_retro | 2009 | 0.77 | FALSE | 4 | Sev: 3095, Not: 2668, Mor: 598, Nea: 335 |
| phq.staying_asleep_sleeping_trouble_retro | 2011 | 0.77 | FALSE | 4 | Sev: 2877, Not: 2228, Mor: 919, Nea: 670 |
| phq.feeling_tired_or_having_little_energy_retro | 2012 | 0.77 | FALSE | 4 | Sev: 3483, Not: 1554, Mor: 1010, Nea: 646 |
| phq.poor_appetite_or_overeating_retro | 2012 | 0.77 | FALSE | 4 | Not: 3292, Sev: 2170, Mor: 765, Nea: 466 |
| phq.feeling_bad_failure_family_retro | 2012 | 0.77 | FALSE | 4 | Not: 3302, Sev: 2228, Mor: 752, Nea: 411 |
| phq.trouble_concentrating_reading_newspaper_retro | 2014 | 0.77 | FALSE | 4 | Not: 3688, Sev: 2064, Mor: 623, Nea: 316 |
| phq.moving_fidgety_noticed_opposite_retro | 2015 | 0.77 | FALSE | 4 | Not: 5289, Sev: 977, Mor: 303, Nea: 121 |
| phq.dead_hurting_thoughts_retro | 2017 | 0.77 | FALSE | 4 | Not: 5134, Sev: 1016, Mor: 340, Nea: 198 |
| phq.little_interest_or_pleasure_in_doing_things_base | 15 | 1.00 | FALSE | 4 | Sev: 3381, Not: 2166, Nea: 1582, Mor: 1561 |
| phq.feeling_down_depressed_or_hopeless_base | 18 | 1.00 | FALSE | 4 | Sev: 3324, Not: 2594, Mor: 1403, Nea: 1366 |
| phq.staying_asleep_sleeping_trouble_base | 16 | 1.00 | FALSE | 4 | Nea: 2681, Sev: 2403, Not: 1833, Mor: 1772 |
| phq.feeling_tired_or_having_little_energy_base | 17 | 1.00 | FALSE | 4 | Sev: 3094, Nea: 2335, Mor: 1964, Not: 1295 |
| phq.poor_appetite_or_overeating_base | 17 | 1.00 | FALSE | 4 | Not: 2845, Sev: 2150, Nea: 1968, Mor: 1725 |
| phq.feeling_bad_failure_family_base | 18 | 1.00 | FALSE | 4 | Not: 3811, Sev: 2268, Nea: 1333, Mor: 1275 |
| phq.trouble_concentrating_reading_newspaper_base | 16 | 1.00 | FALSE | 4 | Not: 2952, Sev: 2648, Mor: 1677, Nea: 1412 |
| phq.moving_fidgety_noticed_opposite_base | 21 | 1.00 | FALSE | 4 | Not: 5922, Sev: 1532, Mor: 822, Nea: 408 |
| phq.dead_hurting_thoughts_base | 26 | 1.00 | FALSE | 4 | Not: 6368, Sev: 1218, Mor: 555, Nea: 538 |
| ocir.felt_pandemic_feelings | 5115 | 0.41 | FALSE | 5 | A l: 1740, No : 1024, Muc: 758, A l: 54 |
| ocir.saved_things_retro | 6148 | 0.29 | FALSE | 5 | Not: 1498, A l: 611, Mod: 229, A l: 169 |
| ocir.i_check_things_more_often_than_necessary_retro | 6144 | 0.29 | FALSE | 5 | Not: 1351, A l: 801, Mod: 239, A l: 131 |
| ocir.arranged_properly_objects_upset_retro | 6144 | 0.29 | FALSE | 5 | Not: 1225, A l: 815, Mod: 270, A l: 166 |
| ocir.feel_compelled_count_things_retro | 6144 | 0.29 | FALSE | 5 | Not: 1945, A l: 347, Mod: 124, A l: 93 |
| ocir.strangers_touch_touched_difficult_retro | 6144 | 0.29 | FALSE | 5 | Not: 1654, A l: 554, Mod: 190, A l: 99 |
| ocir.control_difficult_find_thoughts_retro | 6144 | 0.29 | FALSE | 5 | A l: 941, Not: 656, Mod: 445, A l: 321 |
| ocir.i_collect_things_i_dont_need_retro | 6145 | 0.29 | FALSE | 5 | Not: 1479, A l: 629, Mod: 222, A l: 152 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro | 6148 | 0.29 | FALSE | 5 | Not: 1710, A l: 520, Mod: 172, A l: 119 |
| ocir.arranged_things_change_upset_retro | 6149 | 0.29 | FALSE | 5 | Not: 1114, A l: 824, Mod: 293, A l: 182 |
| ocir.repeat_feel_numbers_retro | 6147 | 0.29 | FALSE | 5 | Not: 2203, A l: 201, Mod: 72, A l: 52 |
| ocir.clean_simply_wash_feel_retro | 6146 | 0.29 | FALSE | 5 | Not: 1676, A l: 593, Mod: 172, A l: 75 |
| ocir.mind_upset_unpleasant_thoughts_retro | 6146 | 0.29 | FALSE | 5 | A l: 955, Not: 722, Mod: 439, A l: 286 |
| ocir.afraid_avoid_throwing_things_retro | 6146 | 0.29 | FALSE | 5 | Not: 1236, A l: 783, Mod: 276, A l: 189 |
| ocir.light_switches_water_taps_retro | 6147 | 0.29 | FALSE | 5 | Not: 1852, A l: 456, Mod: 136, A l: 89 |
| ocir.arranged_things_retro | 6146 | 0.29 | FALSE | 5 | Not: 1236, A l: 788, Mod: 273, A l: 164 |
| ocir.good_feel_bad_numbers_retro | 6147 | 0.29 | FALSE | 5 | Not: 1957, A l: 322, Mod: 123, A l: 80 |
| ocir.hands_longer_wash_retro | 6146 | 0.29 | FALSE | 5 | Not: 1844, A l: 439, Mod: 146, A l: 88 |
| ocir.frequently_difficulty_rid_nasty_retro | 6149 | 0.29 | FALSE | 5 | Not: 913, A l: 843, Mod: 376, A l: 246 |
| ocir.saved_things_base | 5131 | 0.41 | FALSE | 5 | Not: 1688, A l: 830, Mod: 542, A l: 366 |
| ocir.i_check_things_more_often_than_necessary_base | 5115 | 0.41 | FALSE | 5 | A l: 1078, Not: 1076, Mod: 681, A l: 549 |
| ocir.arranged_properly_objects_upset_base | 5115 | 0.41 | FALSE | 5 | Not: 1539, A l: 947, Mod: 561, A l: 366 |
| ocir.feel_compelled_count_things_base | 5117 | 0.41 | FALSE | 5 | Not: 2360, A l: 564, Mod: 277, A l: 243 |
| ocir.strangers_touch_touched_difficult_base | 5115 | 0.41 | FALSE | 5 | Not: 1076, A l: 947, Mod: 562, A l: 562 |
| ocir.control_difficult_find_thoughts_base | 5115 | 0.41 | FALSE | 5 | A l: 1011, Mod: 729, A l: 725, Ext: 568 |
| ocir.i_collect_things_i_dont_need_base | 5117 | 0.41 | FALSE | 5 | Not: 1987, A l: 839, Mod: 350, A l: 248 |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base | 5116 | 0.41 | FALSE | 5 | Not: 2237, A l: 684, Mod: 299, A l: 247 |
| ocir.arranged_things_change_upset_base | 5120 | 0.41 | FALSE | 5 | Not: 1343, A l: 1077, Mod: 478, A l: 377 |
| ocir.repeat_feel_numbers_base | 5116 | 0.41 | FALSE | 5 | Not: 2936, A l: 307, Mod: 148, A l: 123 |
| ocir.clean_simply_wash_feel_base | 5115 | 0.41 | FALSE | 5 | Not: 1323, A l: 1133, Mod: 582, A l: 367 |
| ocir.mind_upset_unpleasant_thoughts_base | 5116 | 0.41 | FALSE | 5 | A l: 1153, Mod: 691, Not: 681, A l: 599 |
| ocir.afraid_avoid_throwing_things_base | 5114 | 0.41 | FALSE | 5 | Not: 1581, A l: 975, Mod: 441, A l: 398 |
| ocir.light_switches_water_taps_base | 5115 | 0.41 | FALSE | 5 | Not: 2533, A l: 584, Mod: 227, A l: 164 |
| ocir.arranged_things_base | 5114 | 0.41 | FALSE | 5 | Not: 1637, A l: 1022, Mod: 418, A l: 324 |
| ocir.good_feel_bad_numbers_base | 5115 | 0.41 | FALSE | 5 | Not: 2641, A l: 395, Mod: 216, A l: 172 |
| ocir.hands_longer_wash_base | 5115 | 0.41 | FALSE | 5 | Not: 1861, A l: 781, Mod: 403, A l: 303 |
| ocir.frequently_difficulty_rid_nasty_base | 5116 | 0.41 | FALSE | 5 | Not: 1099, A l: 1044, Mod: 514, A l: 495 |
| alsfrs.limb_weakness_noticed_past | 219 | 0.97 | FALSE | 2 | No: 7123, Yes: 1363 |
| alsfrs.normal | 7341 | 0.16 | FALSE | 2 | Nor: 963, Not: 401 |
| alsfrs.slow_or_sloppy_all_words_are_legible | 7341 | 0.16 | FALSE | 2 | Not: 1164, Slo: 200 |
| alsfrs.not_all_words_are_legible | 7341 | 0.16 | FALSE | 2 | Not: 1238, Not: 126 |
| alsfrs.able_to_grip_pen | 7341 | 0.16 | FALSE | 2 | Not: 1311, Abl: 53 |
| alsfrs.unable_to_grip_pen | 7341 | 0.16 | FALSE | 2 | Not: 1285, Una: 79 |
| alsfrs.have_you_noticed_any_difficulty_walking | 7342 | 0.16 | FALSE | 6 | Nor: 775, Ear: 435, Nee: 137, Abl: 8 |
| alsfrs.do_you_have_any_difficulty_climbing_stairs | 7338 | 0.16 | FALSE | 5 | Nor: 629, Slo: 311, Mil: 255, Nee: 114 |
| ess.felt_excessively_sleepy_past | 227 | 0.97 | FALSE | 2 | No: 4675, Yes: 3803 |
| ess.sitting_and_reading | 4919 | 0.43 | FALSE | 4 | Sli: 1438, Mod: 1003, Wou: 787, Hig: 558 |
| ess.watching_tv | 4923 | 0.43 | FALSE | 4 | Sli: 1397, Mod: 1104, Hig: 660, Wou: 621 |
| ess.sitting_inactive_in_a_public_place | 4930 | 0.43 | FALSE | 4 | Wou: 2384, Sli: 927, Mod: 315, Hig: 149 |
| ess.break_passenger_car_hour | 4934 | 0.43 | FALSE | 4 | Sli: 1305, Wou: 1151, Mod: 756, Hig: 559 |
| ess.afternoon_rest_circumstances_lying | 4917 | 0.44 | FALSE | 4 | Hig: 1626, Mod: 1060, Sli: 809, Wou: 293 |
| ess.sitting_and_talking_to_someone | 4918 | 0.44 | FALSE | 4 | Wou: 3252, Sli: 419, Mod: 86, Hig: 30 |
| ess.sitting_quietly_after_a_lunch_without_alcohol | 4924 | 0.43 | FALSE | 4 | Wou: 1641, Sli: 1358, Mod: 525, Hig: 257 |
| ess.car_minutes_stopped_traffic | 4926 | 0.43 | FALSE | 4 | Wou: 3319, Sli: 351, Mod: 67, Hig: 42 |
| midas.headaches_suffered_past_month | 227 | 0.97 | FALSE | 2 | No: 4307, Yes: 4171 |
| midas.days_past_month_miss_work_school | 8705 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_work_school_half_productivity | 8705 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_housework | 8705 | 0.00 | FALSE | 0 | Did: 0 |
| midas.days_past_month_housework_half_productivity | 8705 | 0.00 | FALSE | 0 | Was: 0 |
| midas.days_past_month_miss_social_activities | 8705 | 0.00 | FALSE | 0 | Did: 0 |
| nmss.ability_taste_food_smell | 234 | 0.97 | FALSE | 2 | No: 7872, Yes: 599 |
| nmss.severe_taste_smell_loss | 8106 | 0.07 | FALSE | 6 | Mil: 179, Mod: 130, Min: 117, Sev: 79 |
| nmsw.drink_problems_choking_difficulty | 248 | 0.97 | FALSE | 2 | No: 7807, Yes: 650 |
| nmsw.regularly_night_pass_urine | 249 | 0.97 | FALSE | 2 | No: 5069, Yes: 3387 |
| nmsw.sex_difficult_finding | 435 | 0.95 | FALSE | 2 | No: 7323, Yes: 947 |
| nmsw.weak_standing_feeling_light | 250 | 0.97 | FALSE | 2 | No: 5388, Yes: 3067 |
| nmsw.acting_moving_sleep_talking | 272 | 0.97 | FALSE | 2 | No: 6988, Yes: 1445 |
| nmsw.double_vision | 251 | 0.97 | FALSE | 2 | No: 7928, Yes: 526 |
| tinnitus.ears_noises_minutes_head | 243 | 0.97 | FALSE | 2 | No: 6266, Yes: 2196 |
| tinnitus.ears_noises_minutes_head_frequency | 6509 | 0.25 | FALSE | 5 | Som: 944, Now: 704, Now: 343, Not: 189 |
| tinnitus.noises_worry_worst_upset | 6509 | 0.25 | FALSE | 4 | Sli: 1041, Mod: 584, Not: 466, Sev: 105 |
Variable type: logical
| skim_variable | n_missing | complete_rate | mean | count |
|---|---|---|---|---|
| ID.dup | 0 | 1 | 0 | FAL: 8705 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| ID | 0 | 1.00 | 5.485646e+10 | 1.820935e+11 | 50 | 271236 | 548600 | 840148 | 999384675640 | ▇▁▁▁▁ |
| age_category_numeric | 0 | 1.00 | 4.820000e+00 | 2.060000e+00 | 1 | 3 | 5 | 6 | 13 | ▆▆▇▁▁ |
| Gender_numeric | 0 | 1.00 | 8.100000e-01 | 4.300000e-01 | 0 | 1 | 1 | 1 | 3 | ▂▇▁▁▁ |
| Transgender_uncleaned_numeric | 13 | 1.00 | 1.000000e-02 | 1.200000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| Ethnicity_numeric | 43 | 1.00 | 1.110000e+00 | 5.700000e-01 | 1 | 1 | 1 | 1 | 6 | ▇▁▁▁▁ |
| employment.what_is_your_highest_level_of_education_numeric | 9 | 1.00 | 2.910000e+00 | 1.420000e+00 | 0 | 2 | 3 | 4 | 6 | ▅▅▇▃▃ |
| employment.government_work_key_workers_numeric | 3621 | 0.58 | 1.960000e+00 | 3.050000e+00 | 0 | 0 | 1 | 2 | 11 | ▇▁▁▁▁ |
| employment.unemployed_numeric | 36 | 1.00 | 6.000000e-02 | 2.300000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.zerohours_contract_numeric | 36 | 1.00 | 3.000000e-02 | 1.600000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.stayathome_parent_or_carer_numeric | 36 | 1.00 | 3.000000e-02 | 1.700000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.retired_numeric | 459 | 0.95 | 2.600000e-01 | 4.400000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▃ |
| employment.student_gcse_or_a_level_numeric | 36 | 1.00 | 7.000000e-02 | 2.600000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.student_university_numeric | 36 | 1.00 | 7.000000e-02 | 2.500000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.became_unemployed_numeric | 2661 | 0.69 | 6.000000e-02 | 2.400000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_government_funded_numeric | 2661 | 0.69 | 1.000000e-01 | 3.100000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.furloughed_or_paid_leave_company_funded_numeric | 2661 | 0.69 | 2.000000e-02 | 1.300000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| employment.paid_leave_furloughed_numeric | 2661 | 0.69 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| highest_education_numeric | 9 | 1.00 | 3.410000e+00 | 1.080000e+00 | 1 | 3 | 4 | 4 | 5 | ▂▁▂▇▁ |
| key_worker_numeric | 54 | 0.99 | 3.200000e-01 | 4.700000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▃ |
| anxiety_disorders_numeric | 979 | 0.89 | 4.400000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▆ |
| mhd.specific_phobia_e.g._phobia_of_flying_numeric | 979 | 0.89 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.social_anxiety_or_social_phobia_numeric | 979 | 0.89 | 1.000000e-01 | 3.100000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| agoraphobia_panic_disorder_numeric | 979 | 0.89 | 2.100000e-01 | 4.000000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| depressive_disorders_numeric | 979 | 0.89 | 5.100000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1 | 1 | ▇▁▁▁▇ |
| eating_disorders_numeric | 1473 | 0.83 | 7.000000e-02 | 2.500000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| obsessive_compulsive_disorders_numeric | 979 | 0.89 | 8.000000e-02 | 2.700000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| psychotic_disorders_numeric | 1473 | 0.83 | 2.000000e-02 | 1.500000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.mania_hypomania_bipolar_or_manicdepression_numeric | 979 | 0.89 | 3.000000e-02 | 1.700000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.posttraumatic_stress_disorder_ptsd_numeric | 979 | 0.89 | 9.000000e-02 | 2.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| autism_spectrum_disorder_numeric | 1473 | 0.83 | 3.000000e-02 | 1.600000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.attention_deficit_hyperactivity_disorder_numeric | 1473 | 0.83 | 2.000000e-02 | 1.300000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| mhd.personality_disorder_numeric | 1473 | 0.83 | 4.000000e-02 | 2.000000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_a_numeric | 1497 | 0.83 | 0.000000e+00 | 4.000000e-02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_b_numeric | 1497 | 0.83 | 3.000000e-02 | 1.800000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| personality_cluster_c_numeric | 1497 | 0.83 | 0.000000e+00 | 5.000000e-02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| depression_and_anxiety_numeric | 979 | 0.89 | 9.900000e-01 | 9.900000e-01 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▃▂ |
| restricting_vs_binge_eating_eating_disorders_numeric | 1473 | 0.83 | 1.000000e-01 | 3.800000e-01 | 0 | 0 | 0 | 0 | 2 | ▇▁▁▁▁ |
| bipolar_and_schizophrenia_numeric | 1480 | 0.83 | 1.000000e-01 | 4.800000e-01 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| control_numeric | 1015 | 0.88 | 3.400000e-01 | 4.700000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| disorders_total_count | 1480 | 0.83 | 1.300000e+00 | 1.410000e+00 | 0 | 0 | 1 | 2 | 9 | ▇▅▁▁▁ |
| comorbidity_total_count_numeric | 4235 | 0.51 | 1.110000e+00 | 1.230000e+00 | 0 | 0 | 1 | 2 | 8 | ▇▂▁▁▁ |
| comorbidity_total_count_factor_numeric | 4235 | 0.51 | 1.020000e+00 | 1.000000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▃▃ |
| gad.problems_made_difficult_care_numeric | 756 | 0.91 | 1.910000e+00 | 8.100000e-01 | 1 | 1 | 2 | 2 | 4 | ▅▇▁▂▁ |
| gad.pandemic_felt_feelings_numeric | 49 | 0.99 | 2.130000e+00 | 9.400000e-01 | 1 | 1 | 2 | 3 | 5 | ▅▇▅▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_retro_numeric | 2214 | 0.75 | 9.100000e-01 | 8.100000e-01 | 0 | 0 | 1 | 1 | 3 | ▅▇▁▂▁ |
| gad.control_worrying_stop_retro_numeric | 2216 | 0.75 | 7.900000e-01 | 8.300000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| gad.worrying_too_much_about_different_things_retro_numeric | 2214 | 0.75 | 9.700000e-01 | 8.200000e-01 | 0 | 0 | 1 | 1 | 3 | ▅▇▁▂▁ |
| gad.trouble_relaxing_retro_numeric | 2214 | 0.75 | 7.700000e-01 | 8.500000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| gad.sit_restless_hard_retro_numeric | 2217 | 0.75 | 4.100000e-01 | 7.100000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| gad.becoming_easily_annoyed_or_irritable_retro_numeric | 2214 | 0.75 | 8.700000e-01 | 8.200000e-01 | 0 | 0 | 1 | 1 | 3 | ▆▇▁▂▁ |
| gad.awful_feeling_afraid_happen_retro_numeric | 2215 | 0.75 | 6.100000e-01 | 8.300000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▅▁▁▁ |
| gad.feeling_nervous_anxious_or_on_edge_base_numeric | 14 | 1.00 | 1.370000e+00 | 1.050000e+00 | 0 | 1 | 1 | 2 | 3 | ▅▇▁▅▅ |
| gad.control_worrying_stop_base_numeric | 18 | 1.00 | 1.160000e+00 | 1.090000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▃▃ |
| gad.worrying_too_much_about_different_things_base_numeric | 16 | 1.00 | 1.280000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2 | 3 | ▆▇▁▅▅ |
| gad.trouble_relaxing_base_numeric | 17 | 1.00 | 1.270000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▅▅ |
| gad.sit_restless_hard_base_numeric | 18 | 1.00 | 7.000000e-01 | 9.400000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▂▁ |
| gad.becoming_easily_annoyed_or_irritable_base_numeric | 19 | 1.00 | 1.270000e+00 | 1.040000e+00 | 0 | 0 | 1 | 2 | 3 | ▆▇▁▅▃ |
| gad.awful_feeling_afraid_happen_base_numeric | 16 | 1.00 | 1.130000e+00 | 1.090000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▆▁▃▃ |
| gad.sum_score_retro_raw | 0 | 1.00 | 3.980000e+00 | 4.490000e+00 | 0 | 0 | 3 | 6 | 21 | ▇▂▁▁▁ |
| gad.sum_score_base_raw | 0 | 1.00 | 8.170000e+00 | 6.100000e+00 | 0 | 3 | 7 | 13 | 21 | ▇▆▃▃▃ |
| na_per_person_gad_base | 0 | 1.00 | 1.000000e-02 | 2.900000e-01 | 0 | 0 | 0 | 0 | 7 | ▇▁▁▁▁ |
| na_per_person_gad_retro | 0 | 1.00 | 1.780000e+00 | 3.050000e+00 | 0 | 0 | 0 | 7 | 7 | ▇▁▁▁▃ |
| gad.sum_score_base | 25 | 1.00 | 8.180000e+00 | 6.090000e+00 | 0 | 3 | 7 | 13 | 21 | ▇▆▃▃▃ |
| gad.sum_score_retro | 2219 | 0.75 | 5.330000e+00 | 4.460000e+00 | 0 | 2 | 4 | 7 | 21 | ▇▅▂▁▁ |
| pcl.stressful_experience_repeated_images_base_numeric | 358 | 0.96 | 2.120000e+00 | 1.270000e+00 | 1 | 1 | 2 | 3 | 5 | ▇▅▂▂▁ |
| pcl.stressful_experience_upset_reminded_base_numeric | 364 | 0.96 | 2.170000e+00 | 1.260000e+00 | 1 | 1 | 2 | 3 | 5 | ▇▆▂▂▁ |
| pcl.stressful_situation_avoiding_activities_base_numeric | 407 | 0.95 | 1.580000e+00 | 1.050000e+00 | 1 | 1 | 1 | 2 | 5 | ▇▂▁▁▁ |
| pcl.cut_people_feeling_distant_base_numeric | 344 | 0.96 | 2.870000e+00 | 1.360000e+00 | 1 | 2 | 3 | 4 | 5 | ▆▇▅▆▅ |
| pcl.feeling_irritable_or_having_angry_outbursts_base_numeric | 345 | 0.96 | 2.290000e+00 | 1.190000e+00 | 1 | 1 | 2 | 3 | 5 | ▇▇▃▃▁ |
| pcl.difficulty_concentrating_base_numeric | 347 | 0.96 | 2.630000e+00 | 1.320000e+00 | 1 | 2 | 2 | 4 | 5 | ▆▇▅▅▃ |
| pcl.stressful_experience_repeated_images_retro_numeric | 3111 | 0.64 | 1.800000e-01 | 3.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_experience_upset_reminded_retro_numeric | 2889 | 0.67 | 2.000000e-01 | 4.000000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.stressful_situation_avoiding_activities_retro_numeric | 4226 | 0.51 | 1.500000e-01 | 3.500000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| pcl.cut_people_feeling_distant_retro_numeric | 1394 | 0.84 | 7.200000e-01 | 4.500000e-01 | 0 | 0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric | 2075 | 0.76 | 5.500000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1 | 1 | ▆▁▁▁▇ |
| pcl.difficulty_concentrating_retro_numeric | 1764 | 0.80 | 5.600000e-01 | 5.000000e-01 | 0 | 0 | 1 | 1 | 1 | ▆▁▁▁▇ |
| pcl.sum_score_retro_raw | 0 | 1.00 | 1.800000e+00 | 1.570000e+00 | 0 | 0 | 2 | 3 | 6 | ▇▃▃▁▁ |
| pcl.sum_score_base_raw | 0 | 1.00 | 1.310000e+01 | 5.980000e+00 | 0 | 9 | 12 | 17 | 30 | ▂▇▆▃▁ |
| na_per_person_pcl_base | 0 | 1.00 | 2.500000e-01 | 1.160000e+00 | 0 | 0 | 0 | 0 | 6 | ▇▁▁▁▁ |
| na_per_person_pcl_retro | 0 | 1.00 | 1.780000e+00 | 2.020000e+00 | 0 | 0 | 1 | 3 | 6 | ▇▁▂▁▂ |
| pcl.sum_score_base | 423 | 0.95 | 1.364000e+01 | 5.510000e+00 | 6 | 9 | 13 | 17 | 30 | ▇▇▅▂▁ |
| pcl.sum_score_retro | 4929 | 0.43 | 1.930000e+00 | 1.760000e+00 | 0 | 0 | 2 | 3 | 6 | ▇▃▃▁▂ |
| phq.problems_made_difficult_care_numeric | 435 | 0.95 | 1.910000e+00 | 8.100000e-01 | 1 | 1 | 2 | 2 | 4 | ▅▇▁▂▁ |
| phq.pandemic_felt_feelings_numeric | 79 | 0.99 | 2.140000e+00 | 9.500000e-01 | 1 | 1 | 2 | 3 | 5 | ▅▇▅▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_retro_numeric | 2011 | 0.77 | 6.600000e-01 | 7.800000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▆▁▁▁ |
| phq.feeling_down_depressed_or_hopeless_retro_numeric | 2009 | 0.77 | 7.900000e-01 | 8.000000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▇▁▂▁ |
| phq.staying_asleep_sleeping_trouble_retro_numeric | 2011 | 0.77 | 1.000000e+00 | 9.300000e-01 | 0 | 0 | 1 | 1 | 3 | ▆▇▁▂▂ |
| phq.feeling_tired_or_having_little_energy_retro_numeric | 2012 | 0.77 | 1.110000e+00 | 8.700000e-01 | 0 | 1 | 1 | 1 | 3 | ▃▇▁▂▂ |
| phq.poor_appetite_or_overeating_retro_numeric | 2012 | 0.77 | 7.600000e-01 | 9.100000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▅▁▂▁ |
| phq.feeling_bad_failure_family_retro_numeric | 2012 | 0.77 | 7.400000e-01 | 8.900000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▆▁▂▁ |
| phq.trouble_concentrating_reading_newspaper_retro_numeric | 2014 | 0.77 | 6.400000e-01 | 8.400000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▅▁▂▁ |
| phq.moving_fidgety_noticed_opposite_retro_numeric | 2015 | 0.77 | 2.900000e-01 | 6.400000e-01 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| phq.dead_hurting_thoughts_retro_numeric | 2017 | 0.77 | 3.400000e-01 | 7.100000e-01 | 0 | 0 | 0 | 0 | 3 | ▇▂▁▁▁ |
| phq.little_interest_or_pleasure_in_doing_things_base_numeric | 15 | 1.00 | 1.290000e+00 | 1.030000e+00 | 0 | 1 | 1 | 2 | 3 | ▅▇▁▃▃ |
| phq.feeling_down_depressed_or_hopeless_base_numeric | 18 | 1.00 | 1.180000e+00 | 1.030000e+00 | 0 | 0 | 1 | 2 | 3 | ▆▇▁▃▃ |
| phq.staying_asleep_sleeping_trouble_base_numeric | 16 | 1.00 | 1.610000e+00 | 1.130000e+00 | 0 | 1 | 2 | 3 | 3 | ▆▇▁▅▇ |
| phq.feeling_tired_or_having_little_energy_base_numeric | 17 | 1.00 | 1.610000e+00 | 1.040000e+00 | 0 | 1 | 1 | 3 | 3 | ▃▇▁▅▆ |
| phq.poor_appetite_or_overeating_base_numeric | 17 | 1.00 | 1.320000e+00 | 1.150000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▆▁▅▆ |
| phq.feeling_bad_failure_family_base_numeric | 18 | 1.00 | 1.010000e+00 | 1.100000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▅▁▃▃ |
| phq.trouble_concentrating_reading_newspaper_base_numeric | 16 | 1.00 | 1.180000e+00 | 1.070000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▅▃ |
| phq.moving_fidgety_noticed_opposite_base_numeric | 21 | 1.00 | 5.100000e-01 | 8.500000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.dead_hurting_thoughts_base_numeric | 26 | 1.00 | 4.500000e-01 | 8.600000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▂▁▁▁ |
| phq.sum_score_retro_raw | 0 | 1.00 | 4.880000e+00 | 5.470000e+00 | 0 | 0 | 3 | 7 | 27 | ▇▂▁▁▁ |
| phq.sum_score_base_raw | 0 | 1.00 | 1.015000e+01 | 7.010000e+00 | 0 | 4 | 9 | 15 | 27 | ▇▆▆▃▂ |
| na_per_person_phq_retro | 0 | 1.00 | 2.080000e+00 | 3.790000e+00 | 0 | 0 | 0 | 0 | 9 | ▇▁▁▁▂ |
| phq.missing_only_suicide_item_retro | 0 | 1.00 | 0.000000e+00 | 2.000000e-02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| na_per_person_phq_base | 0 | 1.00 | 2.000000e-02 | 3.800000e-01 | 0 | 0 | 0 | 0 | 9 | ▇▁▁▁▁ |
| phq.missing_only_suicide_item_base | 0 | 1.00 | 0.000000e+00 | 3.000000e-02 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| phq.sum_score_base | 36 | 1.00 | 1.017000e+01 | 7.000000e+00 | 0 | 4 | 9 | 15 | 27 | ▇▆▆▃▂ |
| phq.sum_score_8items_base | 0 | 1.00 | 1.015000e+01 | 7.010000e+00 | 0 | 4 | 9 | 15 | 27 | ▇▆▆▃▂ |
| phq.sum_score_retro | 2029 | 0.77 | 6.330000e+00 | 5.440000e+00 | 0 | 2 | 5 | 9 | 27 | ▇▃▂▁▁ |
| phq.sum_score_8items_retro | 0 | 1.00 | 4.880000e+00 | 5.470000e+00 | 0 | 0 | 3 | 7 | 27 | ▇▂▁▁▁ |
| ocir.felt_pandemic_feelings_numeric | 5115 | 0.41 | 2.120000e+00 | 7.600000e-01 | 1 | 2 | 2 | 3 | 5 | ▃▇▅▁▁ |
| ocir.saved_things_retro_numeric | 6148 | 0.29 | 6.900000e-01 | 1.010000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_check_things_more_often_than_necessary_retro_numeric | 6144 | 0.29 | 7.100000e-01 | 9.400000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▅▂▁▁ |
| ocir.arranged_properly_objects_upset_retro_numeric | 6144 | 0.29 | 8.600000e-01 | 1.060000e+00 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.feel_compelled_count_things_retro_numeric | 6144 | 0.29 | 4.200000e-01 | 9.000000e-01 | 0 | 0 | 0 | 0 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_retro_numeric | 6144 | 0.29 | 5.800000e-01 | 9.600000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.control_difficult_find_thoughts_retro_numeric | 6144 | 0.29 | 1.400000e+00 | 1.210000e+00 | 0 | 0 | 1 | 2 | 4 | ▆▇▃▃▂ |
| ocir.i_collect_things_i_dont_need_retro_numeric | 6145 | 0.29 | 7.200000e-01 | 1.050000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric | 6148 | 0.29 | 5.300000e-01 | 9.100000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_retro_numeric | 6149 | 0.29 | 9.900000e-01 | 1.160000e+00 | 0 | 0 | 1 | 1 | 4 | ▇▆▂▁▁ |
| ocir.repeat_feel_numbers_retro_numeric | 6147 | 0.29 | 2.400000e-01 | 7.100000e-01 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_retro_numeric | 6146 | 0.29 | 5.200000e-01 | 8.700000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▃▁▁▁ |
| ocir.mind_upset_unpleasant_thoughts_retro_numeric | 6146 | 0.29 | 1.300000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2 | 4 | ▆▇▃▂▁ |
| ocir.afraid_avoid_throwing_things_retro_numeric | 6146 | 0.29 | 8.600000e-01 | 1.060000e+00 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.light_switches_water_taps_retro_numeric | 6147 | 0.29 | 4.300000e-01 | 8.200000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_retro_numeric | 6146 | 0.29 | 8.700000e-01 | 1.080000e+00 | 0 | 0 | 1 | 1 | 4 | ▇▅▂▁▁ |
| ocir.good_feel_bad_numbers_retro_numeric | 6147 | 0.29 | 4.300000e-01 | 9.400000e-01 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_retro_numeric | 6146 | 0.29 | 4.500000e-01 | 8.700000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.frequently_difficulty_rid_nasty_retro_numeric | 6149 | 0.29 | 1.190000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▇▃▂▂ |
| ocir.saved_things_base_numeric | 5131 | 0.41 | 1.010000e+00 | 1.190000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▃▂▂▁ |
| ocir.i_check_things_more_often_than_necessary_base_numeric | 5115 | 0.41 | 1.370000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▇▅▅▂ |
| ocir.arranged_properly_objects_upset_base_numeric | 5115 | 0.41 | 1.080000e+00 | 1.200000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▅▃▂▁ |
| ocir.feel_compelled_count_things_base_numeric | 5117 | 0.41 | 6.800000e-01 | 1.120000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.strangers_touch_touched_difficult_base_numeric | 5115 | 0.41 | 1.540000e+00 | 1.380000e+00 | 0 | 0 | 1 | 3 | 4 | ▇▇▅▅▃ |
| ocir.control_difficult_find_thoughts_base_numeric | 5115 | 0.41 | 1.930000e+00 | 1.320000e+00 | 0 | 1 | 2 | 3 | 4 | ▅▇▆▆▅ |
| ocir.i_collect_things_i_dont_need_base_numeric | 5117 | 0.41 | 8.200000e-01 | 1.140000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▃▂▁▁ |
| ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric | 5116 | 0.41 | 7.000000e-01 | 1.090000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_change_upset_base_numeric | 5120 | 0.41 | 1.230000e+00 | 1.290000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▆▃▂▂ |
| ocir.repeat_feel_numbers_base_numeric | 5116 | 0.41 | 3.500000e-01 | 8.800000e-01 | 0 | 0 | 0 | 0 | 4 | ▇▁▁▁▁ |
| ocir.clean_simply_wash_feel_base_numeric | 5115 | 0.41 | 1.150000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▇▃▂▁ |
| ocir.mind_upset_unpleasant_thoughts_base_numeric | 5116 | 0.41 | 1.730000e+00 | 1.300000e+00 | 0 | 1 | 1 | 3 | 4 | ▅▇▅▅▃ |
| ocir.afraid_avoid_throwing_things_base_numeric | 5114 | 0.41 | 1.070000e+00 | 1.220000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▅▂▂▁ |
| ocir.light_switches_water_taps_base_numeric | 5115 | 0.41 | 5.200000e-01 | 9.600000e-01 | 0 | 0 | 0 | 1 | 4 | ▇▂▁▁▁ |
| ocir.arranged_things_base_numeric | 5114 | 0.41 | 1.000000e+00 | 1.190000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▅▂▂▁ |
| ocir.good_feel_bad_numbers_base_numeric | 5115 | 0.41 | 5.600000e-01 | 1.100000e+00 | 0 | 0 | 0 | 1 | 4 | ▇▁▁▁▁ |
| ocir.hands_longer_wash_base_numeric | 5115 | 0.41 | 9.600000e-01 | 1.250000e+00 | 0 | 0 | 0 | 2 | 4 | ▇▃▂▁▁ |
| ocir.frequently_difficulty_rid_nasty_base_numeric | 5116 | 0.41 | 1.480000e+00 | 1.370000e+00 | 0 | 0 | 1 | 3 | 4 | ▇▇▃▃▃ |
| ocir.sum_score_retro_raw | 0 | 1.00 | 9.170000e+00 | 1.551000e+01 | 0 | 0 | 0 | 21 | 86 | ▇▂▁▁▁ |
| ocir.sum_score_base_raw | 0 | 1.00 | 1.532000e+01 | 2.018000e+01 | 0 | 0 | 0 | 31 | 90 | ▇▃▂▁▁ |
| na_per_person_ocir_retro | 0 | 1.00 | 1.271000e+01 | 8.190000e+00 | 0 | 0 | 18 | 18 | 18 | ▃▁▁▁▇ |
| na_per_person_ocir_base | 0 | 1.00 | 1.058000e+01 | 8.860000e+00 | 0 | 0 | 18 | 18 | 18 | ▆▁▁▁▇ |
| ocir.sum_score_base | 5146 | 0.41 | 3.712000e+01 | 1.327000e+01 | 18 | 27 | 34 | 44 | 90 | ▇▆▂▁▁ |
| ocir.sum_score_retro | 6165 | 0.29 | 3.120000e+01 | 1.148000e+01 | 18 | 23 | 28 | 36 | 86 | ▇▃▁▁▁ |
| alsfrs.limb_weakness_noticed_past_numeric | 219 | 0.97 | 1.600000e-01 | 3.700000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| alsfrs.normal_numeric | 7341 | 0.16 | 7.100000e-01 | 4.600000e-01 | 0 | 0 | 1 | 1 | 1 | ▃▁▁▁▇ |
| alsfrs.slow_or_sloppy_all_words_are_legible_numeric | 7341 | 0.16 | 1.500000e-01 | 3.500000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| alsfrs.not_all_words_are_legible_numeric | 7341 | 0.16 | 9.000000e-02 | 2.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.able_to_grip_pen_numeric | 7341 | 0.16 | 4.000000e-02 | 1.900000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.unable_to_grip_pen_numeric | 7341 | 0.16 | 6.000000e-02 | 2.300000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| alsfrs.have_you_noticed_any_difficulty_walking_numeric | 7342 | 0.16 | 5.600000e-01 | 7.500000e-01 | 0 | 0 | 0 | 1 | 5 | ▇▁▁▁▁ |
| alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric | 7338 | 0.16 | 1.020000e+00 | 1.170000e+00 | 0 | 0 | 1 | 2 | 4 | ▇▃▃▂▁ |
| ess.felt_excessively_sleepy_past_numeric | 227 | 0.97 | 4.500000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▆ |
| ess.sitting_and_reading_numeric | 4919 | 0.43 | 1.350000e+00 | 9.700000e-01 | 0 | 1 | 1 | 2 | 3 | ▅▇▁▆▃ |
| ess.watching_tv_numeric | 4923 | 0.43 | 1.480000e+00 | 9.600000e-01 | 0 | 1 | 1 | 2 | 3 | ▃▇▁▆▃ |
| ess.sitting_inactive_in_a_public_place_numeric | 4930 | 0.43 | 5.300000e-01 | 8.100000e-01 | 0 | 0 | 0 | 1 | 3 | ▇▃▁▁▁ |
| ess.break_passenger_car_hour_numeric | 4934 | 0.43 | 1.190000e+00 | 1.030000e+00 | 0 | 0 | 1 | 2 | 3 | ▇▇▁▅▃ |
| ess.afternoon_rest_circumstances_lying_numeric | 4917 | 0.44 | 2.060000e+00 | 9.700000e-01 | 0 | 1 | 2 | 3 | 3 | ▂▃▁▅▇ |
| ess.sitting_and_talking_to_someone_numeric | 4918 | 0.44 | 1.800000e-01 | 4.900000e-01 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.sitting_quietly_after_a_lunch_without_alcohol_numeric | 4924 | 0.43 | 8.400000e-01 | 9.100000e-01 | 0 | 0 | 1 | 1 | 3 | ▇▆▁▂▁ |
| ess.car_minutes_stopped_traffic_numeric | 4926 | 0.43 | 1.600000e-01 | 4.900000e-01 | 0 | 0 | 0 | 0 | 3 | ▇▁▁▁▁ |
| ess.insomnia_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.narcolepsy_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.rem_sleep_behaviour_disorder_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.restless_legs_syndrome_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleep_apnea_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleep_terrors_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.sleepwalking_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.other_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| ess.none_numeric | 8705 | 0.00 | NaN | NA | NA | NA | NA | NA | NA | |
| midas.headaches_suffered_past_month_numeric | 227 | 0.97 | 4.900000e-01 | 5.000000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▇ |
| midas.days_past_month_miss_work_school_numeric | 4885 | 0.44 | 1.370000e+00 | 4.190000e+00 | 0 | 0 | 0 | 0 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_work_school_half_productivity_numeric | 4927 | 0.43 | 2.730000e+00 | 5.300000e+00 | 0 | 0 | 0 | 3 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_housework_numeric | 4797 | 0.45 | 4.200000e+00 | 6.250000e+00 | 0 | 0 | 2 | 5 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_housework_half_productivity_numeric | 4830 | 0.45 | 4.440000e+00 | 6.640000e+00 | 0 | 0 | 2 | 6 | 31 | ▇▁▁▁▁ |
| midas.days_past_month_miss_social_activities_numeric | 4970 | 0.43 | 2.300000e+00 | 5.320000e+00 | 0 | 0 | 0 | 2 | 31 | ▇▁▁▁▁ |
| nmss.ability_taste_food_smell_numeric | 234 | 0.97 | 7.000000e-02 | 2.600000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmss.severe_taste_smell_loss_numeric | 8106 | 0.07 | 2.370000e+00 | 1.350000e+00 | 0 | 1 | 2 | 3 | 5 | ▇▇▆▃▂ |
| nmsw.drink_problems_choking_difficulty_numeric | 248 | 0.97 | 8.000000e-02 | 2.700000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.regularly_night_pass_urine_numeric | 249 | 0.97 | 4.000000e-01 | 4.900000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▆ |
| nmsw.sex_difficult_finding_numeric | 435 | 0.95 | 1.100000e-01 | 3.200000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| nmsw.weak_standing_feeling_light_numeric | 250 | 0.97 | 3.600000e-01 | 4.800000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▅ |
| nmsw.acting_moving_sleep_talking_numeric | 272 | 0.97 | 1.700000e-01 | 3.800000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▂ |
| nmsw.double_vision_numeric | 251 | 0.97 | 6.000000e-02 | 2.400000e-01 | 0 | 0 | 0 | 0 | 1 | ▇▁▁▁▁ |
| tinnitus.ears_noises_minutes_head_numeric | 243 | 0.97 | 2.600000e-01 | 4.400000e-01 | 0 | 0 | 0 | 1 | 1 | ▇▁▁▁▃ |
| tinnitus.ears_noises_minutes_head_frequency_numeric | 6509 | 0.25 | 2.700000e+00 | 1.030000e+00 | 0 | 2 | 2 | 4 | 4 | ▁▂▇▃▆ |
| tinnitus.noises_worry_worst_upset_numeric | 6509 | 0.25 | 1.150000e+00 | 8.000000e-01 | 0 | 1 | 1 | 2 | 3 | ▃▇▁▅▁ |
Variable type: POSIXct
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| startDate.coping | 0 | 1 | 2020-04-07 10:10:40 | 2020-08-04 14:44:35 | 2020-04-24 16:44:19 | 8695 |
Definition of prepandemic and baseline
Exlcude people who have joined GLAD/EDGI after the pandemic began, sensitivity analyses done on the cut off’s we have chosen. Potentially GLAD/EDGI particiapnts between January to April. EDGI launched on February 24th.
Prepandemic GLAD/EDGI = Prepandemic (GLAD/EDGI sign-up questionnaire)
Retrospective = COPING/RAMP sign up questionnaire; only of those participants who have reported a change in symptoms
Baseline = COPING/RAMP sign up questionnaire
Dates for the definition of prepandemic
Calculate the time difference between starting the COPING questionnaire and the beginning of the pandemic
Descriptive Statistics
dat$time_diff_coping_first_case_uk_jan_31
N: 8705
time_diff_coping_first_case_uk_jan_31
--------------- ---------------------------------------
Mean 12.74
Std.Dev 2.38
Min 9.63
Median 12.10
Max 26.66
N.Valid 8705.00
Pct.Valid 100.00Calculate the time difference between sign up questionnaire and the beginning of the pandemic
Testing 3, 6, and 9 months before pandemic
Calculate the time difference between sign up questionnaire and COPING questionnaire
Proportion of people signed up over one year ago
Proportion of people signed up over half a year ago
#Total score comparison between PHQ, PCL and GAD, prepandemic, retrospecive and baseline PHQ difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-24.000 2.000 5.000 5.147 8.000 27.000 2039 GAD difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-21.000 1.000 4.000 4.267 7.000 21.000 2224 PCL difference scores NOTE: Only computed baseline and prepandemic differences as the retro account here isn’t actually retrospective, but whether the reported baseline scores are due to the pandemic.
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
0.000 0.000 2.000 1.928 3.000 6.000 4929 Frequencies
dat$pcl.stressful_experience_repeated_images_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 1021 18.25 18.25 11.73 11.73
No 4573 81.75 100.00 52.53 64.26
<NA> 3111 35.74 100.00
Total 8705 100.00 100.00 100.00 100.00Frequencies
dat$pcl.stressful_situation_avoiding_activities_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 653 14.58 14.58 7.50 7.50
No 3826 85.42 100.00 43.95 51.45
<NA> 4226 48.55 100.00
Total 8705 100.00 100.00 100.00 100.00Frequencies
dat$pcl.feeling_irritable_or_having_angry_outbursts_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 3679 55.49 55.49 42.26 42.26
No 2951 44.51 100.00 33.90 76.16
<NA> 2075 23.84 100.00
Total 8705 100.00 100.00 100.00 100.00Frequencies
dat$pcl.stressful_experience_upset_reminded_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 1141 19.62 19.62 13.11 13.11
No 4675 80.38 100.00 53.70 66.81
<NA> 2889 33.19 100.00
Total 8705 100.00 100.00 100.00 100.00Frequencies
dat$pcl.cut_people_feeling_distant_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 5293 72.40 72.40 60.80 60.80
No 2018 27.60 100.00 23.18 83.99
<NA> 1394 16.01 100.00
Total 8705 100.00 100.00 100.00 100.00Frequencies
dat$pcl.difficulty_concentrating_retro
Type: Factor
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
Yes 3914 56.39 56.39 44.96 44.96
No 3027 43.61 100.00 34.77 79.74
<NA> 1764 20.26 100.00
Total 8705 100.00 100.00 100.00 100.00OCI-R difference scores
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
-21.00 3.00 6.00 7.76 12.00 72.00 6177 #Data level groups Identify which data (prepan, retro and baseline) each participant has.
Baseline and retrospective data Baseline data only
6666 2003
Retrospective data only
10 GAD
Baseline and retrospective data Baseline data only
6481 2199
Retrospective data only
5 PCL
Baseline and retrospective data Baseline data only
3741 4541
Retrospective data only
35 OCI-R
Baseline and retrospective data Baseline data only
2528 1031
Retrospective data only
12 #Read in respiratory data
GLAD respiratory
Select respiratory variables
EDGI respiratory
Select respiratory variables
NBR respiratory
Select respiratory variables
RAMP respiratory
[1] "externalDataReference"
[2] "startDate"
[3] "endDate"
[4] "Login ID"
[5] "respiratory.experienced_symptoms_unusual_shortness"
[6] "respiratory.date_symptom_experience.txt"
[7] "respiratory.chillsfeverhigh_temperature"
[8] "respiratory.persistent_cough"
[9] "respiratory.shortness_of_breath"
[10] "respiratory.body_achemuscle_pain"
[11] "respiratory.sore_throat"
[12] "respiratory.headache"
[13] "respiratory.sneezing"
[14] "respiratory.runny_nose"
[15] "respiratory.blocked_nose"
[16] "respiratory.feeling_generally_unwell"
[17] "respiratory.feeling_tiredfatigued"
[18] "respiratory.diarrhoea"
[19] "respiratory.hoarse_voice"
[20] "respiratory.unusual_chest_pain_chest"
[21] "respiratory.unusual_abdominal_pain"
[22] "respiratory.feeling_confused_drowsy_disorientated"
[23] "respiratory.skipping_meals_because_you_felt_unwell"
[24] "respiratory.was_your_persistent_cough_dry_"
[25] "respiratory.smell_impaired_sense_weeks"
[26] "respiratory.what_was_the_highest_temperature_you_had"
[27] "respiratory.throat_swab_coronavirus_nose"
[28] "respiratory.throat_swab_test_nose"
[29] "respiratory.coronavirus_week_antibody_test"
[30] "respiratory.results_antibody_test"
[31] "respiratory.paracetamol_panadol_anadin"
[32] "respiratory.ibuprofen_nurofen_brufen_and_calprofen_syrup"
[33] "respiratory.aspirin"
[34] "respiratory.naproxen"
[35] "respiratory.cold_and_flu_remedies_please_specify"
[36] "respiratory.cold_and_flu_remedies_please_specify_text.txt"
[37] "respiratory.none_of_these"
[38] "respiratory.i_called_nhs111"
[39] "respiratory.i_called_my_gp"
[40] "respiratory.face_appointment_face"
[41] "respiratory.hospital_accident_attended_emergency"
[42] "respiratory.field_hospital_hospital_treatment"
[43] "respiratory.none_of_these.1"
[44] "respiratory.what_dates_were_you_admitted_to_hospital.txt"
[45] "respiratory.none"
[46] "respiratory.fluids_oxygen"
[47] "respiratory.invasive_ventilation"
[48] "respiratory.invasive_ventilation.1"
[49] "respiratory.resolved_experienced_symptoms_weeks"
[50] "respiratory.feel_healthy_date_back.txt"
[51] "respiratory.episode_weeks_experienced_ongoing"
[52] "respiratory.experienced_medical_problem_injury"
[53] "respiratory.was_the_illness_or_injury_lifethreatening"
[54] "respiratory.treatment_admitted_hospital_injury"
[55] "respiratory.injury_result_health_illness"
[56] "respiratory.birth_defect_born_child"
[57] "respiratory.recent_illness_nature_describe.txt"
[58] "respiratory.prescribed_regular_medication_change"
[59] "respiratory.addition_of_a_new_medication"
[60] "respiratory.stopping_medication_previously_taking"
[61] "respiratory.dose_change_medication_previously"
[62] "respiratory.medication_packaging_field_blank"
[63] "respiratory.medication_packaging_field_blank.1"
[64] "respiratory.medication_packaging_field_blank.2"
[65] "respiratory.medication_packaging_field_blank.3"
[66] "respiratory.medication_packaging_field_blank.4"
[67] "respiratory.prescribed_additional_medication_week"
[68] "respiratory.medication_packaging_field_blank.5"
[69] "respiratory.medication_packaging_field_blank.6"
[70] "respiratory.medication_packaging_field_blank.7"
[71] "respiratory.medication_packaging_field_blank.8"
[72] "respiratory.medication_packaging_field_blank.9"
[73] "respiratory.add_discontinued_medication.txt"
[74] "respiratory.stopped_medication_previously_taking"
[75] "respiratory.add_discontinued_medication.txt.1"
[76] "respiratory.dosing_regimen_record_details"
[77] "respiratory.dosing_regimen_record_details.1"
[78] "respiratory.dosing_regimen_record_details.2"
[79] "respiratory.dosing_regimen_record_details.3"
[80] "respiratory.dosing_regimen_record_details.4"
[81] "respiratory.worst_ill_feel"
[82] "respiratory.what_dates_were_you_discharged_from_hospital.txt"
[83] "respiratory.taste_impaired_sense_weeks" Select respiratory variables
[1] 34#Distribution of likert scale COVID-19 symptoms in COPING
Warning: Removed 8750 rows containing non-finite values (stat_count).
Warning: Removed 8749 rows containing non-finite values (stat_count).
Warning: Removed 8752 rows containing non-finite values (stat_count).
#Choosing cut-offs for the likert scale symptoms of “no symptoms”, “mild symptoms”, “moderate symptoms” and “severe symptoms” for the fatigue, persistent cough and skipped meals variables. Coding: 0 = No symptoms 1 = Mild symptoms 2 = Moderate symptoms 3 = Severe symptoms
Results: Persistent cough: “Mild symptoms” as cut off Fatigue: “Severe symptoms” as cut off Skipped meals: “Moderate symptoms” as cut off
[1] 0.302976269.70238%
1 [1] 0.0879120491.2088%
3 [1] 0.19202180.7979%
1 Creating binary groups for COVID symptoms
Frequencies of binary COVID symptoms
Frequencies
respiratory.raw.id$respiratory.anosmia_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
0 470 71.32 71.32 4.92 4.92
1 189 28.68 100.00 1.98 6.90
<NA> 8888 93.10 100.00
Total 9547 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.pcough_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
0 225 28.23 28.23 2.36 2.36
1 572 71.77 100.00 5.99 8.35
<NA> 8750 91.65 100.00
Total 9547 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.fatigue_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
0 595 74.56 74.56 6.23 6.23
1 203 25.44 100.00 2.13 8.36
<NA> 8749 91.64 100.00
Total 9547 100.00 100.00 100.00 100.00Frequencies
respiratory.raw.id$respiratory.skipped_meals_binary
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
0 460 57.86 57.86 4.82 4.82
1 335 42.14 100.00 3.51 8.33
<NA> 8752 91.67 100.00
Total 9547 100.00 100.00 100.00 100.00Rename respiratory dataset joined to main dataset
Probable COVID-19 case identification
Algorithm from Menni et al. to identify probable COVID-19 Variables required: - Sex: 0 Female, 1 Male - Other binary variables: 0 No, 1 Yes
- “respiratory.anosmia_binary”: loss of smell or taste
- “respiratory.pcough_binary”: Persistent cough - “respiratory.fatigue_binary”: Severe fatigue - “respiratory.skipped_meals_binary”: Skipped meals
The COVID prediction model has coded the sexes opposite to our data set
Sex is no available in the RAMP dataset, therefore a proxy sex variable is created whereby Gender = Male and Transgender = No.
Age is not available in RAMP, only categorical age. We will assign each individual the middle value of each age category.
Frequencies
dat.coping$covid_symptoms
Type: Numeric
Freq % Valid % Total
----------- ------ --------- ---------
0 8062 92.61 92.61
1 643 7.39 7.39
<NA> 0 0.00
Total 8705 100.00 100.00Frequencies
dat.coping$covid_odds_ratio_50
Type: Factor
Freq % Valid % Total
-------------------- ------ --------- ---------
No COVID 460 71.54 5.28
Probable COVID 183 28.46 2.10
<NA> 8062 92.61
Total 8705 100.00 100.00Probable COVID case including the routing question
Frequencies
dat.coping$covid_probable_case_incl_screening
Type: Factor
Freq % Valid % Total
-------------------- ------ --------- ---------
No COVID 8177 97.81 93.93
Probable COVID 183 2.19 2.10
<NA> 345 3.96
Total 8705 100.00 100.00